Detailed information    

insolico Bioinformatically predicted

Overview


Name   priA   Type   Machinery gene
Locus tag   ACJEHP_RS14650 Genome accession   NZ_CP174237
Coordinates   3272250..3274427 (+) Length   725 a.a.
NCBI ID   WP_011216700.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF588     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3267250..3279427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHP_RS14620 (ACJEHP_14620) - 3267722..3268165 (-) 444 WP_011216694.1 hypothetical protein -
  ACJEHP_RS14625 (ACJEHP_14625) - 3268247..3269233 (+) 987 WP_011216695.1 tRNA-dihydrouridine synthase -
  ACJEHP_RS14630 (ACJEHP_14630) - 3269292..3269651 (-) 360 WP_011216696.1 hypothetical protein -
  ACJEHP_RS14635 (ACJEHP_14635) - 3269708..3270463 (-) 756 WP_041173838.1 pteridine reductase -
  ACJEHP_RS14640 (ACJEHP_14640) - 3270640..3271752 (+) 1113 WP_011216698.1 class I SAM-dependent methyltransferase -
  ACJEHP_RS14645 (ACJEHP_14645) - 3271755..3272249 (+) 495 WP_011216699.1 6-carboxytetrahydropterin synthase -
  ACJEHP_RS14650 (ACJEHP_14650) priA 3272250..3274427 (+) 2178 WP_011216700.1 primosomal protein N' Machinery gene
  ACJEHP_RS14655 (ACJEHP_14655) - 3274424..3274816 (+) 393 WP_011216701.1 thioesterase family protein -
  ACJEHP_RS14660 (ACJEHP_14660) - 3274925..3275215 (-) 291 WP_070322286.1 hypothetical protein -
  ACJEHP_RS14665 (ACJEHP_14665) thyA 3275291..3276085 (-) 795 WP_011216703.1 thymidylate synthase -
  ACJEHP_RS14670 (ACJEHP_14670) lgt 3276082..3276852 (-) 771 WP_011216704.1 prolipoprotein diacylglyceryl transferase -
  ACJEHP_RS14675 (ACJEHP_14675) - 3276870..3277676 (-) 807 WP_011216705.1 sulfite exporter TauE/SafE family protein -

Sequence


Protein


Download         Length: 725 a.a.        Molecular weight: 81627.01 Da        Isoelectric Point: 9.2839

>NTDB_id=964035 ACJEHP_RS14650 WP_011216700.1 3272250..3274427(+) (priA) [Legionella pneumophila strain SPF588]
MNDIYQVCIPHTNRDCFDYEALDLTPCIGGRVWVPFRNQTRVGIVINKVCDQQTGHSLKKITSIIDEKPLVPEALLELCL
WVGSYYQSPLSEVIPLVIPKKYRLGLPCSLPTEDFYQLNIPVEKAKTLISKKAKKQHELIDFLSRHQKGISKQTLKQHGY
NGAQIAALLACQAINLSQQVTLPTKIPEKLSPPLTLNPEQAVAVASIFEHIHHYQCFLLQGVTGSGKTEVYLHVIAKILE
QGKQVLVLVPEIGLTPQLLSRFTARFNHPITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLPNLGLIIIDEEH
DSSLKQMEGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLIDLRSQMVQHGL
ALPTLKIIENHLLQQNQVLVFINRRGFAPVLLCHQCGWMVDCKACDSHLTLHKQAGQMICHHCGLTQRIPLFCNNCQSKE
LIPVGSGTQRIYEFLSHQFPDTNVLRIDRDEVRKKNSLNSHLDKINKGEAQLIIGTQMLAKGHHFPRLSLVVVVDADAGF
YNQDFRAIEHLGQLLTQVSGRAGRAEHPGQVLIQTYLPDHPLLNLLIQHGYDEFANALLISRQEAEMPPFQFLAVIRAQG
RTVSKVDQFLKATKDQIQAHPLTVLGPAPAPLPRKANQHRMQLLIKSPSRKVLKSSLTQLREWLTMNKLSNGIRWNVDVD
PMDLS

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=964035 ACJEHP_RS14650 WP_011216700.1 3272250..3274427(+) (priA) [Legionella pneumophila strain SPF588]
ATGAACGATATTTATCAAGTTTGTATCCCCCATACCAATCGAGATTGTTTTGATTACGAAGCCCTGGATTTAACTCCATG
CATTGGCGGAAGAGTATGGGTTCCTTTCCGTAATCAAACCCGAGTGGGCATTGTAATCAATAAAGTTTGTGACCAGCAAA
CGGGCCATTCGTTAAAGAAAATCACTTCAATAATCGATGAGAAACCTCTCGTTCCTGAAGCTCTCTTAGAGCTTTGTCTA
TGGGTAGGAAGCTATTATCAGTCACCATTATCTGAAGTGATTCCTTTGGTAATACCCAAAAAATATCGCCTGGGTTTACC
CTGCTCACTACCTACAGAAGATTTTTATCAATTGAATATACCTGTTGAAAAGGCAAAGACACTCATCTCGAAAAAAGCAA
AAAAACAACATGAGTTGATTGATTTTTTAAGCAGGCACCAGAAAGGGATTTCCAAACAGACCTTAAAACAACATGGCTAC
AACGGAGCTCAAATTGCGGCACTACTTGCTTGTCAAGCCATTAACCTGTCACAGCAAGTTACCTTGCCAACCAAAATTCC
TGAAAAACTCAGTCCACCGCTAACACTCAATCCTGAACAAGCCGTTGCCGTAGCTTCCATTTTCGAACACATCCATCACT
ACCAATGCTTTTTACTGCAAGGTGTTACCGGAAGTGGTAAGACAGAGGTTTATTTGCATGTCATCGCCAAAATATTGGAG
CAAGGCAAACAAGTATTGGTGTTGGTACCAGAAATCGGGTTAACCCCTCAGCTTTTATCTCGTTTTACAGCCCGATTTAA
CCATCCCATAACCGTATTACATTCCAATTTGAATGAATCAGAAAGACAAATTGCCTGGCAGCTGGCAAAAGAGAACAAAG
TTAAAATGGTGATTGGAACTCGTTCTGCCGTTTTTACCCCTCTGCCCAATCTCGGTTTAATTATCATCGATGAAGAGCAT
GACAGTTCGCTCAAACAAATGGAGGGGGTGCGTTATTCTGCGCGAGATACTGCTTTAATGCGTGCTCACCTTGCCAATAT
TCCTATCATTCTTGGTACAGCCACTCCCAGTCTGGAAACCATCCACAACTGCAAACAAAAAAAATATAATTTATTACGCT
TAACGCATAAAGCTGCCTCCACTACACCATTACACTATCAACTGATCGATTTACGATCGCAAATGGTACAGCATGGCTTG
GCTCTCCCAACCCTTAAAATCATAGAAAATCATTTGCTGCAACAAAACCAGGTTCTTGTTTTCATTAACCGACGCGGCTT
TGCCCCAGTGTTACTTTGCCATCAATGTGGATGGATGGTTGATTGCAAAGCATGTGATAGCCATTTAACCTTGCATAAAC
AGGCAGGACAAATGATTTGTCATCATTGCGGATTAACCCAAAGAATACCCTTGTTTTGCAATAACTGCCAAAGCAAGGAA
CTAATCCCCGTAGGATCTGGCACCCAGAGAATTTATGAGTTTTTAAGCCATCAGTTTCCAGATACGAATGTTTTACGAAT
TGACCGAGATGAGGTTCGTAAAAAAAATTCTCTAAACAGCCATTTGGACAAAATTAATAAAGGAGAAGCTCAGCTGATCA
TAGGCACTCAAATGCTAGCCAAGGGACACCATTTCCCCCGCCTATCCCTGGTCGTTGTCGTAGATGCTGATGCGGGCTTT
TACAACCAGGATTTCCGGGCTATTGAACATTTGGGGCAATTATTAACTCAAGTATCTGGACGAGCTGGGCGAGCAGAACA
TCCCGGGCAAGTATTGATTCAAACTTATTTACCTGATCATCCCCTGCTTAATCTACTCATTCAGCATGGGTATGATGAGT
TTGCAAACGCTTTATTAATTTCAAGACAAGAGGCTGAAATGCCCCCTTTTCAGTTTTTAGCGGTCATCAGAGCTCAGGGC
AGAACCGTCAGCAAGGTGGATCAATTCCTAAAAGCAACCAAAGATCAAATTCAGGCTCATCCTCTCACGGTACTGGGTCC
TGCACCAGCTCCTTTGCCACGAAAAGCTAACCAGCATAGGATGCAACTATTAATTAAATCCCCTTCAAGAAAAGTTCTAA
AAAGTTCATTGACGCAATTAAGAGAGTGGTTAACAATGAACAAATTAAGTAATGGCATCCGCTGGAATGTGGATGTTGAT
CCTATGGACTTATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

41.94

100

0.423