Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NST79_RS18480 Genome accession   NZ_CP150159
Coordinates   3554644..3555333 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. PS196     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549644..3560333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS18445 (NST79_18445) flgN 3549825..3550307 (-) 483 WP_014478127.1 flagellar protein FlgN -
  NST79_RS18450 (NST79_18450) flgM 3550323..3550589 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST79_RS18455 (NST79_18455) - 3550670..3551089 (-) 420 WP_212059110.1 TIGR03826 family flagellar region protein -
  NST79_RS18460 (NST79_18460) comFC 3551162..3551884 (-) 723 WP_212059112.1 ComF family protein Machinery gene
  NST79_RS18465 (NST79_18465) comFB 3551848..3552144 (-) 297 WP_015483764.1 late competence protein ComFB -
  NST79_RS18470 (NST79_18470) comFA 3552204..3553595 (-) 1392 WP_212059114.1 ATP-dependent helicase ComFA Machinery gene
  NST79_RS18475 (NST79_18475) - 3553701..3554546 (-) 846 WP_003244125.1 DegV family protein -
  NST79_RS18480 (NST79_18480) degU 3554644..3555333 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NST79_RS18485 (NST79_18485) degS 3555416..3556573 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NST79_RS18490 (NST79_18490) - 3556790..3557443 (+) 654 WP_003227979.1 YigZ family protein -
  NST79_RS18495 (NST79_18495) tagV 3557443..3558618 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NST79_RS18500 (NST79_18500) - 3558691..3559767 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=964018 NST79_RS18480 WP_003219701.1 3554644..3555333(-) (degU) [Bacillus sp. PS196]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=964018 NST79_RS18480 WP_003219701.1 3554644..3555333(-) (degU) [Bacillus sp. PS196]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1