Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NST79_RS18460 Genome accession   NZ_CP150159
Coordinates   3551162..3551884 (-) Length   240 a.a.
NCBI ID   WP_212059112.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3546162..3556884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS18425 (NST79_18425) fliW 3546302..3546733 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NST79_RS18430 (NST79_18430) - 3546754..3547329 (-) 576 WP_015384781.1 DUF6470 family protein -
  NST79_RS18435 (NST79_18435) flgL 3547376..3548272 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NST79_RS18440 (NST79_18440) flgK 3548283..3549806 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NST79_RS18445 (NST79_18445) flgN 3549825..3550307 (-) 483 WP_014478127.1 flagellar protein FlgN -
  NST79_RS18450 (NST79_18450) flgM 3550323..3550589 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST79_RS18455 (NST79_18455) - 3550670..3551089 (-) 420 WP_212059110.1 TIGR03826 family flagellar region protein -
  NST79_RS18460 (NST79_18460) comFC 3551162..3551884 (-) 723 WP_212059112.1 ComF family protein Machinery gene
  NST79_RS18465 (NST79_18465) comFB 3551848..3552144 (-) 297 WP_015483764.1 late competence protein ComFB -
  NST79_RS18470 (NST79_18470) comFA 3552204..3553595 (-) 1392 WP_212059114.1 ATP-dependent helicase ComFA Machinery gene
  NST79_RS18475 (NST79_18475) - 3553701..3554546 (-) 846 WP_003244125.1 DegV family protein -
  NST79_RS18480 (NST79_18480) degU 3554644..3555333 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NST79_RS18485 (NST79_18485) degS 3555416..3556573 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27523.76 Da        Isoelectric Point: 9.3154

>NTDB_id=964016 NST79_RS18460 WP_212059112.1 3551162..3551884(-) (comFC) [Bacillus sp. PS196]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRSRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINVFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=964016 NST79_RS18460 WP_212059112.1 3551162..3551884(-) (comFC) [Bacillus sp. PS196]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGAGCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGTATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983