Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NST79_RS08830 Genome accession   NZ_CP150159
Coordinates   1668482..1669375 (+) Length   297 a.a.
NCBI ID   WP_212060482.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1663482..1674375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS08810 (NST79_08810) - 1664152..1665882 (+) 1731 WP_212060486.1 hypothetical protein -
  NST79_RS08815 (NST79_08815) - 1665879..1666160 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NST79_RS08820 (NST79_08820) sucC 1666333..1667490 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NST79_RS08825 (NST79_08825) sucD 1667519..1668421 (+) 903 WP_212060484.1 succinate--CoA ligase subunit alpha -
  NST79_RS08830 (NST79_08830) dprA 1668482..1669375 (+) 894 WP_212060482.1 DNA-processing protein DprA Machinery gene
  NST79_RS08835 (NST79_08835) topA 1669563..1671638 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  NST79_RS08840 (NST79_08840) trmFO 1671714..1673021 (+) 1308 WP_122894536.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST79_RS08845 (NST79_08845) xerC 1673089..1674003 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32933.25 Da        Isoelectric Point: 9.8776

>NTDB_id=963982 NST79_RS08830 WP_212060482.1 1668482..1669375(+) (dprA) [Bacillus sp. PS196]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKYHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=963982 NST79_RS08830 WP_212060482.1 1668482..1669375(+) (dprA) [Bacillus sp. PS196]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAATACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.327

100

0.993
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

42.481

89.562

0.38