Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST79_RS02030 Genome accession   NZ_CP150159
Coordinates   371690..372139 (-) Length   149 a.a.
NCBI ID   WP_033883649.1    Uniprot ID   -
Organism   Bacillus sp. PS196     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366690..377139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS01995 (NST79_01995) - 366851..367531 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NST79_RS02000 (NST79_02000) - 367541..368404 (-) 864 WP_167407835.1 transporter substrate-binding domain-containing protein -
  NST79_RS02005 (NST79_02005) - 368566..368754 (+) 189 Protein_351 hypothetical protein -
  NST79_RS02010 (NST79_02010) - 368773..369228 (+) 456 WP_029317190.1 RDD family protein -
  NST79_RS02015 (NST79_02015) - 369310..369642 (+) 333 WP_015252849.1 YckD family protein -
  NST79_RS02020 (NST79_02020) bglC 369795..371228 (+) 1434 WP_167407836.1 6-phospho-beta-glucosidase -
  NST79_RS02025 (NST79_02025) nin/comJ 371265..371663 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  NST79_RS02030 (NST79_02030) nucA/comI 371690..372139 (-) 450 WP_033883649.1 DNA-entry nuclease Machinery gene
  NST79_RS02035 (NST79_02035) tlpC 372307..374028 (-) 1722 WP_212060622.1 methyl-accepting chemotaxis protein -
  NST79_RS02040 (NST79_02040) hxlB 374139..374696 (-) 558 WP_069322365.1 6-phospho-3-hexuloisomerase -
  NST79_RS02045 (NST79_02045) hxlA 374702..375334 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NST79_RS02050 (NST79_02050) hxlR 375562..375924 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.42 Da        Isoelectric Point: 4.5282

>NTDB_id=963956 NST79_RS02030 WP_033883649.1 371690..372139(-) (nucA/comI) [Bacillus sp. PS196]
MNITTDIIKTILLVIVIIAAAAIGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=963956 NST79_RS02030 WP_033883649.1 371690..372139(-) (nucA/comI) [Bacillus sp. PS196]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTATCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98