Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACJEIB_RS11465 Genome accession   NZ_CP174236
Coordinates   2577184..2578539 (-) Length   451 a.a.
NCBI ID   WP_027265192.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF589     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2572184..2583539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIB_RS11450 (ACJEIB_11450) pilU 2572924..2574045 (-) 1122 WP_011216215.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACJEIB_RS11455 (ACJEIB_11455) - 2574135..2576063 (-) 1929 WP_011216216.1 hypothetical protein -
  ACJEIB_RS11460 (ACJEIB_11460) - 2576351..2577151 (-) 801 WP_011216217.1 phytanoyl-CoA dioxygenase family protein -
  ACJEIB_RS11465 (ACJEIB_11465) radA/sms 2577184..2578539 (-) 1356 WP_027265192.1 DNA repair protein RadA Machinery gene
  ACJEIB_RS11470 (ACJEIB_11470) - 2578770..2579648 (+) 879 WP_011216219.1 lpg2327 family Dot/Icm T4SS effector -
  ACJEIB_RS11475 (ACJEIB_11475) lem22 2579912..2580295 (+) 384 WP_011216220.1 Dot/Icm T4SS effector Lem22 -
  ACJEIB_RS11480 (ACJEIB_11480) - 2580489..2580719 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  ACJEIB_RS11485 (ACJEIB_11485) - 2580700..2581596 (+) 897 WP_011216221.1 polyprenyl synthetase family protein -
  ACJEIB_RS11490 (ACJEIB_11490) bioC 2581640..2582494 (-) 855 WP_011216222.1 malonyl-ACP O-methyltransferase BioC -
  ACJEIB_RS11495 (ACJEIB_11495) comFC 2582538..2583242 (+) 705 WP_011216223.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49033.75 Da        Isoelectric Point: 7.7495

>NTDB_id=963955 ACJEIB_RS11465 WP_027265192.1 2577184..2578539(-) (radA/sms) [Legionella pneumophila strain SPF589]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIMPESKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPDPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDNETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=963955 ACJEIB_RS11465 WP_027265192.1 2577184..2578539(-) (radA/sms) [Legionella pneumophila strain SPF589]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAATGGGCAGGACAATGTACTCAATG
TGGTGCCTGGAATTCCATTGTTGAAGAAGGAATTATGCCTGAAAGCAAGACTTTACGAAGCGGGCAATGGGCTAATCAGC
GCTCTGTTATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGACTACCTTTGGCCGGACTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAGCCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAGGTCCGGGAATCAGCAGCGCAATTGGTGCGTTATGCCAAGATGACTAATACGGCGATTTTCCTGGTAGGGC
ATGTCACTAAGGAAGGAACCTTGGCCGGGCCTCGAGTGTTAGAACATATGGTTGATAGTGTTCTTTATTTTGAAGGGCAA
AACGACAGTCGTTTCAGAGTTATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCCATGAC
AGACAAAGGTCTGAAGGAAGTGGCCAATCCCTCAGCTATTTTTTTATCTCGCCAGCCTGATCCTACGCCAGGCAGCGCAG
TGATGGTAACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAGGCATTGGTTGATGAGGCCCACGGCCAGCAAGCG
AAACGCGTTACTGCCGGGCTTGAGCATAATCGCCTGGCGATTTTGTTAGCTGTCTTGCACCGCCATGGAGGTATTGCCAC
TTACGATCAGGACGTTTTTATCAATGTAGTAGGGGGAGTTAAGGTAACGGAAACAGCGAGTGATTTAGCATTGTTGGCCG
CGGTGATTTCCAGTTTGCGTAATCGTATATTTGACAATGAAACCATCATATTCGGTGAGGTAGGATTGGCGGGAGAAATC
AGACCGGTGCAAAGTGGTCAGGAACGCATTAAGGAAGCTATAAAACATGGATTCAAGCGTGCTATAGTTCCTTTTGCCAA
TGCTCCCAAACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(74-219)

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.806

96.009

0.459
  radA Streptococcus pneumoniae Rx1

48.349

94.013

0.455
  radA Streptococcus pneumoniae D39

48.349

94.013

0.455
  radA Streptococcus pneumoniae R6

48.349

94.013

0.455
  radA Streptococcus pneumoniae TIGR4

48.349

94.013

0.455
  radA Streptococcus mitis SK321

48.349

94.013

0.455
  radA Streptococcus mitis NCTC 12261

48.113

94.013

0.452