Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ21_RS01980 Genome accession   NZ_CP150158
Coordinates   371742..372191 (-) Length   149 a.a.
NCBI ID   WP_213377037.1    Uniprot ID   -
Organism   Bacillus sp. PS210     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366742..377191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS01945 (NSQ21_01945) - 366893..367573 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSQ21_RS01950 (NSQ21_01950) - 367583..368446 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  NSQ21_RS01955 (NSQ21_01955) - 368608..368805 (+) 198 WP_119122841.1 hypothetical protein -
  NSQ21_RS01960 (NSQ21_01960) - 368824..369279 (+) 456 WP_003246356.1 RDD family protein -
  NSQ21_RS01965 (NSQ21_01965) - 369361..369693 (+) 333 WP_003246247.1 YckD family protein -
  NSQ21_RS01970 (NSQ21_01970) bglC 369847..371280 (+) 1434 WP_213377039.1 family 1 glycosylhydrolase -
  NSQ21_RS01975 (NSQ21_01975) nin/comJ 371317..371715 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  NSQ21_RS01980 (NSQ21_01980) nucA/comI 371742..372191 (-) 450 WP_213377037.1 DNA-entry nuclease Machinery gene
  NSQ21_RS01985 (NSQ21_01985) tlpC 372359..374080 (-) 1722 WP_213377036.1 methyl-accepting chemotaxis protein -
  NSQ21_RS01990 (NSQ21_01990) hxlB 374191..374748 (-) 558 WP_213377034.1 6-phospho-3-hexuloisomerase -
  NSQ21_RS01995 (NSQ21_01995) hxlA 374754..375386 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NSQ21_RS02000 (NSQ21_02000) hxlR 375618..375980 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16569.56 Da        Isoelectric Point: 4.6274

>NTDB_id=963872 NSQ21_RS01980 WP_213377037.1 371742..372191(-) (nucA/comI) [Bacillus sp. PS210]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINERHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=963872 NSQ21_RS01980 WP_213377037.1 371742..372191(-) (nucA/comI) [Bacillus sp. PS210]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGAGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973