Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NSQ21_RS01975 Genome accession   NZ_CP150158
Coordinates   371317..371715 (-) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus sp. PS210     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 366317..376715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS01945 (NSQ21_01945) - 366893..367573 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSQ21_RS01950 (NSQ21_01950) - 367583..368446 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  NSQ21_RS01955 (NSQ21_01955) - 368608..368805 (+) 198 WP_119122841.1 hypothetical protein -
  NSQ21_RS01960 (NSQ21_01960) - 368824..369279 (+) 456 WP_003246356.1 RDD family protein -
  NSQ21_RS01965 (NSQ21_01965) - 369361..369693 (+) 333 WP_003246247.1 YckD family protein -
  NSQ21_RS01970 (NSQ21_01970) bglC 369847..371280 (+) 1434 WP_213377039.1 family 1 glycosylhydrolase -
  NSQ21_RS01975 (NSQ21_01975) nin/comJ 371317..371715 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  NSQ21_RS01980 (NSQ21_01980) nucA/comI 371742..372191 (-) 450 WP_213377037.1 DNA-entry nuclease Machinery gene
  NSQ21_RS01985 (NSQ21_01985) tlpC 372359..374080 (-) 1722 WP_213377036.1 methyl-accepting chemotaxis protein -
  NSQ21_RS01990 (NSQ21_01990) hxlB 374191..374748 (-) 558 WP_213377034.1 6-phospho-3-hexuloisomerase -
  NSQ21_RS01995 (NSQ21_01995) hxlA 374754..375386 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NSQ21_RS02000 (NSQ21_02000) hxlR 375618..375980 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=963871 NSQ21_RS01975 WP_015252845.1 371317..371715(-) (nin/comJ) [Bacillus sp. PS210]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=963871 NSQ21_RS01975 WP_015252845.1 371317..371715(-) (nin/comJ) [Bacillus sp. PS210]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985