Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OO986_RS07960 Genome accession   NZ_AP026552
Coordinates   1672804..1674297 (+) Length   497 a.a.
NCBI ID   WP_264921935.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667804..1679297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS07945 (VV208B2_14480) - 1668828..1669520 (+) 693 WP_065090450.1 tyrosine-protein kinase family protein -
  OO986_RS07950 (VV208B2_14490) - 1669517..1670335 (+) 819 WP_108693838.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  OO986_RS07955 (VV208B2_14500) - 1670359..1672647 (+) 2289 WP_108693839.1 ATP-binding protein -
  OO986_RS07960 (VV208B2_14510) luxO 1672804..1674297 (+) 1494 WP_264921935.1 sigma-54 dependent transcriptional regulator Regulator
  OO986_RS07965 (VV208B2_14520) - 1674290..1675423 (+) 1134 WP_108693841.1 glycosyltransferase -
  OO986_RS07970 (VV208B2_14530) - 1675531..1676724 (+) 1194 WP_108693842.1 glycosyltransferase -
  OO986_RS07975 (VV208B2_14540) - 1676721..1677899 (+) 1179 WP_108693843.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55721.75 Da        Isoelectric Point: 6.5066

>NTDB_id=96372 OO986_RS07960 WP_264921935.1 1672804..1674297(+) (luxO) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDVPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIAACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEVKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNVEHLPAQLTTKPQTVKEPAKL
STPPQPAQAVIHEMHNGHEALNHHSLETETSKANPLAHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=96372 OO986_RS07960 WP_264921935.1 1672804..1674297(+) (luxO) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAGCCCTA
TGACATTTTTCACGTAGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACGCCGCAACTGGTGATTTTAGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTTGACTGGATCAACCAAAACGATGTTCCGACCGCGGTTATCATTGCC
ACCGCTCATGGTTCCGTCGACATCGCCGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTAAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGGCCACGTTATCATGGCTTTATCGCCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCG
CCAACCACCGCCAGTGTTTTTATCAACGGAGAAAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATCCACAAACAGAG
CCTACGCAAAGAGCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACCGGTGCGACAACCGACCGCAAAGGTGCGGCAATGCTGGCCAACGGCGGCACTTTGTTTCTC
GATGAATTGTGCGAAATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACTGGTACCTTCACCCCACTCGG
CGGCAGTAAAGAAGTCAAGGTGGATGTGCGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCCATTGAAATGCCGCCACTGAGAGAACGAGGTAACGACATT
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAGGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCGCA
ATCAATACTCAAAAAATACAACTGGCCGGGCAATGTTCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATGTGGAACATTTGCCGGCTCAGCTCACCACCAAACCGCAAACCGTCAAAGAACCCGCTAAACTC
TCAACCCCACCTCAACCTGCTCAAGCGGTCATACACGAGATGCACAACGGACATGAGGCGTTAAACCATCATTCGCTTGA
GACGGAAACATCCAAGGCCAATCCACTCGCTCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAACGCGAAGCGATTCAAAACGCCATCGCCTTTTGCGATGGCAACGTGATCAGTGCGGCGGTGATGTTGGAGCTAAGC
CCCTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(148-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

51.029

97.787

0.499
  pilR Acinetobacter baumannii strain A118

36.81

98.39

0.362

Multiple sequence alignment