Detailed information NTG0963697

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NSQ16_RS19540
• Genome accession: NZ_CP150155
• Coordinates: 3757544..3758689 (+)
• Length: 381 a.a.
• NCBI ID: WP_080529921.1
• Uniprot ID: -
• Organism: Bacillus sp. PS108
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3752544..3763689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NSQ16_RS19515 (NSQ16_19515)	-	3752563..3753843 (+)	1281	WP_032722698.1	pitrilysin family protein	-
NSQ16_RS19520 (NSQ16_19520)	albG	3753840..3754541 (+)	702	WP_327836339.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
NSQ16_RS19525 (NSQ16_19525)	-	3754547..3755920 (-)	1374	WP_230488586.1	YncE family protein	-
NSQ16_RS19530 (NSQ16_19530)	-	3755959..3757314 (-)	1356	WP_015250986.1	YncE family protein	-
NSQ16_RS19535 (NSQ16_19535)	-	3757311..3757541 (-)	231	WP_069703618.1	hypothetical protein	-
NSQ16_RS19540 (NSQ16_19540)	rapF	3757544..3758689 (+)	1146	WP_080529921.1	tetratricopeptide repeat protein	Regulator
NSQ16_RS19545 (NSQ16_19545)	-	3758673..3758792 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NSQ16_RS19550 (NSQ16_19550)	-	3758907..3759357 (+)	451	Protein_3792	YbaK/EbsC family protein	-
NSQ16_RS19555 (NSQ16_19555)	speB	3759389..3760261 (-)	873	WP_003227545.1	agmatinase	-
NSQ16_RS19560 (NSQ16_19560)	speE	3760322..3761152 (-)	831	WP_003227543.1	spermidine synthase	-
NSQ16_RS19565 (NSQ16_19565)	-	3761354..3763429 (+)	2076	WP_043858873.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45565.18 Da
• Isoelectric Point: 4.9877

>NTDB_id=963697 NSQ16_RS19540 WP_080529921.1 3757544..3758689(+) (rapF) [Bacillus sp. PS108]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=963697 NSQ16_RS19540 WP_080529921.1 3757544..3758689(+) (rapF) [Bacillus sp. PS108]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAACTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTTGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAACAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (263-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.315	100	0.803
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57