Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NSQ16_RS05980 Genome accession   NZ_CP150155
Coordinates   1161934..1162887 (+) Length   317 a.a.
NCBI ID   WP_014476425.1    Uniprot ID   A0A0K6M9I2
Organism   Bacillus sp. PS108     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156934..1167887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS05955 (NSQ16_05955) argF 1158767..1159726 (+) 960 WP_327837727.1 ornithine carbamoyltransferase -
  NSQ16_RS05960 (NSQ16_05960) - 1159812..1159991 (+) 180 WP_003245356.1 YjzC family protein -
  NSQ16_RS05965 (NSQ16_05965) - 1160037..1160222 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  NSQ16_RS05970 (NSQ16_05970) - 1160471..1161205 (+) 735 WP_033883595.1 hypothetical protein -
  NSQ16_RS05975 (NSQ16_05975) - 1161287..1161844 (+) 558 WP_014479435.1 hypothetical protein -
  NSQ16_RS05980 (NSQ16_05980) med 1161934..1162887 (+) 954 WP_014476425.1 transcriptional regulator Med Regulator
  NSQ16_RS05985 (NSQ16_05985) comZ 1162902..1163093 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  NSQ16_RS05990 (NSQ16_05990) yjzB 1163123..1163362 (-) 240 WP_003232972.1 spore coat protein YjzB -
  NSQ16_RS05995 (NSQ16_05995) fabH 1163527..1164465 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  NSQ16_RS06000 (NSQ16_06000) fabF 1164488..1165729 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  NSQ16_RS06005 (NSQ16_06005) - 1165805..1166590 (+) 786 WP_032725393.1 DUF2268 domain-containing protein -
  NSQ16_RS06010 (NSQ16_06010) appD 1166782..1167768 (+) 987 WP_046160279.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.84 Da        Isoelectric Point: 4.6031

>NTDB_id=963643 NSQ16_RS05980 WP_014476425.1 1161934..1162887(+) (med) [Bacillus sp. PS108]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=963643 NSQ16_RS05980 WP_014476425.1 1161934..1162887(+) (med) [Bacillus sp. PS108]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATTTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.685

100

0.997