Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSS87_RS30745 Genome accession   NZ_CP150151
Coordinates   6949431..6949937 (-) Length   168 a.a.
NCBI ID   WP_036677780.1    Uniprot ID   A0AA95LKX1
Organism   Paenibacillus sp. FSL F4-0243     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6944431..6954937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS87_RS30730 (NSS87_30730) opp4A 6944709..6946439 (-) 1731 WP_339244148.1 oligopeptide ABC transporter substrate-binding protein -
  NSS87_RS30735 (NSS87_30735) - 6946631..6948586 (-) 1956 WP_339244150.1 DNA mismatch repair protein MutS -
  NSS87_RS30740 (NSS87_30740) rpsR 6949137..6949409 (-) 273 WP_036651767.1 30S ribosomal protein S18 -
  NSS87_RS30745 (NSS87_30745) ssbA 6949431..6949937 (-) 507 WP_036677780.1 single-stranded DNA-binding protein Machinery gene
  NSS87_RS30750 (NSS87_30750) rpsF 6949986..6950270 (-) 285 WP_036677776.1 30S ribosomal protein S6 -
  NSS87_RS30755 (NSS87_30755) - 6950486..6950683 (+) 198 WP_042131720.1 YjzC family protein -
  NSS87_RS30765 (NSS87_30765) - 6951200..6951412 (-) 213 WP_042193044.1 DUF951 domain-containing protein -
  NSS87_RS30770 (NSS87_30770) - 6951412..6952440 (-) 1029 WP_339244153.1 mechanosensitive ion channel domain-containing protein -
  NSS87_RS30775 (NSS87_30775) - 6952456..6952707 (-) 252 WP_042193047.1 DUF3343 domain-containing protein -
  NSS87_RS30780 (NSS87_30780) yyaC 6952826..6953431 (+) 606 WP_042131724.1 spore protease YyaC -
  NSS87_RS30785 (NSS87_30785) - 6953406..6953906 (-) 501 WP_339244154.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18518.32 Da        Isoelectric Point: 4.8280

>NTDB_id=963516 NSS87_RS30745 WP_036677780.1 6949431..6949937(-) (ssbA) [Paenibacillus sp. FSL F4-0243]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNTSSGASSMPEEPAYGGGGNAGRGNNNNNFSRNNNTQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=963516 NSS87_RS30745 WP_036677780.1 6949431..6949937(-) (ssbA) [Paenibacillus sp. FSL F4-0243]
TTGTTGAACCGTATCATTTTGATCGGACGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAATTTACGCTAGCCGTAGATCGTAACTTTACGGGCCAGAACGGTGAACGTGAGGCAGACTTCATCCCGGTTGTAACCT
GGAGACAGCTAGCAGAAACCTGTGCCAATTACTTGCGCAAAGGTCGTCTGACAGCAGTGGAAGGACGCATCCAAGTGCGG
AATTATGAGAATAACGAAGGCAAACGTGTATACGTAACTGAAGTTATTGCTGATAATGTTCGTTTCCTGGAATCTTCACA
GAGCCGTGAAGGTGGAAATACTTCAAGTGGTGCAAGTAGTATGCCTGAAGAGCCAGCATATGGTGGCGGTGGTAACGCTG
GACGCGGAAATAACAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGTAAACCGATTGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

49.708

100

0.506