Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSS87_RS18960 Genome accession   NZ_CP150151
Coordinates   4269569..4270636 (-) Length   355 a.a.
NCBI ID   WP_042128809.1    Uniprot ID   A0A089IN72
Organism   Paenibacillus sp. FSL F4-0243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4264569..4275636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS87_RS18940 (NSS87_18940) - 4265417..4265677 (-) 261 WP_019910496.1 stage V sporulation protein S -
  NSS87_RS18945 (NSS87_18945) - 4265878..4266672 (-) 795 WP_042189389.1 TIGR00282 family metallophosphoesterase -
  NSS87_RS18950 (NSS87_18950) rny 4266815..4268356 (-) 1542 WP_042128807.1 ribonuclease Y -
  NSS87_RS18955 (NSS87_18955) - 4268673..4269404 (-) 732 WP_339242079.1 RecX family transcriptional regulator -
  NSS87_RS18960 (NSS87_18960) recA 4269569..4270636 (-) 1068 WP_042128809.1 recombinase RecA Machinery gene
  NSS87_RS18965 (NSS87_18965) - 4270936..4272222 (-) 1287 WP_042189391.1 competence/damage-inducible protein A -
  NSS87_RS18970 (NSS87_18970) pgsA 4272332..4272919 (-) 588 WP_036688397.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS87_RS18975 (NSS87_18975) - 4273073..4273564 (-) 492 WP_042128814.1 YajQ family cyclic di-GMP-binding protein -
  NSS87_RS18980 (NSS87_18980) - 4273766..4273927 (-) 162 WP_179086684.1 hypothetical protein -
  NSS87_RS18985 (NSS87_18985) - 4274007..4274969 (-) 963 WP_339242084.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38452.96 Da        Isoelectric Point: 4.9163

>NTDB_id=963497 NSS87_RS18960 WP_042128809.1 4269569..4270636(-) (recA) [Paenibacillus sp. FSL F4-0243]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPKYARNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRT
KIKIVKNKVAPPFKQADVDIMYGEGISREGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENAKQFLKEHQDIALIIENK
IREASNLSTIVAAPNEAEIIAEQEEEEKLLLEIEQ

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=963497 NSS87_RS18960 WP_042128809.1 4269569..4270636(-) (recA) [Paenibacillus sp. FSL F4-0243]
TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGATCATGAAACT
GGGAGAATCCACTCATATGCAAGTGGAAGTTGTACCTAGCGGATCTTTGGCACTTGATATTGCGTTAGGTATAGGCGGAC
TTCCAAAGGGACGTATTATTGAAGTATACGGACCTGAATCCTCCGGTAAAACGACTGTTGCTCTTCATGCTATTGCAGAA
GTGCAAAAACAAGGAGGACAAGCTGCATTTATCGATGCTGAGCATGCGCTCGATCCGAAGTATGCACGTAACTTGGGCGT
AAACATTGATGAATTGTTGCTATCTCAGCCAGATACGGGTGAACAGGCACTTGAGATTGCTGAAGCACTTGTCCGTAGTG
GTGCAGTAGACATTATTGTCGTTGACTCCGTAGCTGCGTTGGTTCCTAAAGCGGAAATCGAAGGTGATATGGGTGACTCT
CACGTCGGCCTACAGGCTCGTTTGATGTCTCAAGCGCTTCGGAAGCTATCTGGTGCCATTAGTAAATCGAATACAATTGC
TATCTTTATTAACCAGCTTCGTGAGAAAATTGGTGTTATGTTCGGTAACCCTGAGACAACCCCGGGTGGTCGGGCGTTGA
AATTCTATTCTTCCGTACGGTTGGATGTTCGTCGTGTCGAAAGTATTAAGATGGGTAACGACGTTGTAGGTAACCGCACC
AAGATCAAGATTGTGAAGAATAAGGTAGCACCTCCATTTAAACAAGCTGATGTTGATATCATGTATGGTGAAGGGATTTC
CAGAGAAGGAAGTCTTGTAGACATCGGTACTGAAATGGACATCGTGAATAAGAGTGGTGCATGGTATTCCTATGAGGGTG
AGCGTCTCGGCCAAGGACGTGAGAATGCCAAACAGTTCTTGAAAGAACATCAAGATATTGCACTCATCATTGAGAACAAG
ATCCGTGAAGCAAGTAACCTGTCCACTATTGTTGCTGCACCAAATGAAGCTGAAATCATTGCAGAGCAAGAGGAAGAAGA
AAAGCTACTTCTCGAAATCGAACAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089IN72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.113

0.775
  recA Latilactobacillus sakei subsp. sakei 23K

73.171

92.394

0.676
  recA Streptococcus pneumoniae TIGR4

66.952

98.873

0.662
  recA Streptococcus pneumoniae Rx1

66.952

98.873

0.662
  recA Streptococcus pneumoniae D39

66.952

98.873

0.662
  recA Streptococcus pneumoniae R6

66.952

98.873

0.662
  recA Streptococcus pyogenes NZ131

70.37

91.268

0.642
  recA Streptococcus mutans UA159

69.753

91.268

0.637
  recA Streptococcus mitis NCTC 12261

69.538

91.549

0.637
  recA Streptococcus mitis SK321

69.231

91.549

0.634
  recA Lactococcus lactis subsp. cremoris KW2

68.182

92.958

0.634
  recA Acinetobacter baumannii D1279779

63.143

98.592

0.623
  recA Glaesserella parasuis strain SC1401

62.857

98.592

0.62
  recA Ralstonia pseudosolanacearum GMI1000

65.766

93.803

0.617
  recA Vibrio cholerae strain A1552

64.118

95.775

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.118

95.775

0.614
  recA Acinetobacter baylyi ADP1

62.108

98.873

0.614
  recA Neisseria gonorrhoeae MS11

64.671

94.085

0.608
  recA Neisseria gonorrhoeae MS11

64.671

94.085

0.608
  recA Neisseria gonorrhoeae strain FA1090

64.671

94.085

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.501

94.93

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.113

0.586
  recA Helicobacter pylori 26695

61.721

94.93

0.586
  recA Helicobacter pylori strain NCTC11637

61.424

94.93

0.583
  recA Pseudomonas stutzeri DSM 10701

63.438

90.141

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

90.986

0.569