Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NSU01_RS25140 Genome accession   NZ_CP150147
Coordinates   5822770..5824536 (+) Length   588 a.a.
NCBI ID   WP_218639449.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0259     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5817770..5829536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU01_RS25125 (NSU01_25125) - 5818639..5819703 (-) 1065 WP_076244674.1 suppressor of fused domain protein -
  NSU01_RS25130 (NSU01_25130) - 5819904..5820461 (+) 558 WP_042138977.1 SMI1/KNR4 family protein -
  NSU01_RS25135 (NSU01_25135) rcrP 5821013..5822770 (+) 1758 WP_042138979.1 ABC transporter ATP-binding protein Regulator
  NSU01_RS25140 (NSU01_25140) rcrQ 5822770..5824536 (+) 1767 WP_218639449.1 ABC transporter ATP-binding protein Regulator
  NSU01_RS25145 (NSU01_25145) - 5824627..5826216 (-) 1590 WP_076244512.1 sensor domain-containing diguanylate cyclase -
  NSU01_RS25150 (NSU01_25150) - 5826379..5827341 (-) 963 WP_076244510.1 alpha/beta fold hydrolase -
  NSU01_RS25155 (NSU01_25155) - 5827370..5828395 (-) 1026 WP_042138984.1 glycoside hydrolase family 130 protein -
  NSU01_RS25160 (NSU01_25160) - 5828419..5829252 (-) 834 WP_076244508.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64068.29 Da        Isoelectric Point: 6.6129

>NTDB_id=963360 NSU01_RS25140 WP_218639449.1 5822770..5824536(+) (rcrQ) [Paenibacillus sp. FSL H8-0259]
MKMKTKAKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLLGPDMLSEITDKITAGLAGGIDMDGIAAIGITLVVIYA
ISAVLSLSQGLIMSNITQKVSKKLRTDLAHKMNRLPISYYNKSATGDILSRVTNDVDTIGQAMNQSIGTVVTAVAMFIGS
IIMMLRTNVIMTLTAIVATIIGFGLMAVIMKKSQKYFASQQEFLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQG
LKNSAFKAQFLSGLMPPLMGFIGNLGFVAVCVVGAVLALDGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQSASAAGG
RVFEFLEEAEMEDETRKENTLATAAGKVSFDQVKFAYDNSGNLVIKNFSTEVKPGQKVAIVGPTGAGKTTLVNLLIRFNE
LTGGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLIYNQQNITDEKLVEACKAVGLHRFIQSLSDGYDTVLN
DKVNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDI
LESGSHTELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=963360 NSU01_RS25140 WP_218639449.1 5822770..5824536(+) (rcrQ) [Paenibacillus sp. FSL H8-0259]
ATGAAGATGAAAACCAAAGCTAAAGGACAGAATACCTGGAGCAAGCTGCTCCGTTACTGCCGTAAATACGTTCCGGTGAT
CGTCATTGCGCTGATCTGCGCGGCGGCCGGAACCGTGCTCACCCTGCTCGGTCCGGATATGCTCTCCGAGATTACGGACA
AAATCACTGCCGGTCTCGCAGGCGGGATCGATATGGACGGCATTGCTGCCATCGGCATCACCCTCGTCGTGATCTACGCC
ATCAGCGCGGTGCTCTCACTCTCGCAGGGCCTGATCATGTCGAATATTACCCAGAAGGTCTCCAAGAAATTAAGAACCGA
TCTGGCTCATAAGATGAACCGGCTTCCGATCTCCTACTATAATAAGTCGGCCACAGGGGATATCCTCTCCCGGGTAACGA
ATGATGTGGATACCATCGGCCAGGCAATGAATCAGAGCATAGGTACAGTCGTAACTGCCGTAGCCATGTTCATCGGTTCG
ATCATCATGATGCTCCGGACCAATGTAATTATGACCCTTACCGCTATCGTAGCGACAATCATCGGCTTCGGCCTGATGGC
GGTTATTATGAAGAAATCGCAGAAGTATTTTGCCAGCCAGCAGGAATTCTTGGGCAAAATCAACGGTCATGTTGAGGAAG
TCTATACCGGACATAACGTTGTAAAAGCCTACAACGGTGAAGCGCAGATGCGCACCACCTTCCAGGAATTAAATCAGGGA
TTGAAGAACAGCGCCTTCAAAGCGCAATTCCTCTCCGGACTGATGCCGCCGCTGATGGGCTTTATCGGTAATCTCGGTTT
CGTCGCCGTCTGTGTCGTTGGCGCTGTACTGGCCTTGGATGGAACTATCTCCTTCGGGGTTATCGTCGCCTTCATTATGT
ATGTACGTTACTTCACCCAGCCGTTATCCCAGATCGCCCAGGCCGCGCAGAACCTGCAATCGGCATCGGCCGCAGGCGGA
CGCGTGTTTGAATTCCTCGAAGAAGCAGAAATGGAAGACGAGACCCGCAAAGAGAACACACTGGCAACAGCGGCAGGCAA
AGTAAGCTTTGACCAGGTGAAATTCGCTTACGATAATTCCGGGAACCTGGTGATCAAAAACTTCTCGACAGAAGTGAAGC
CGGGGCAAAAGGTGGCCATCGTCGGCCCGACCGGCGCAGGCAAAACTACGCTCGTCAATCTGCTCATCCGCTTCAACGAG
CTGACCGGCGGAGAAATCTACATCGATGACACACCGATCAGCAGTCTGACGAGGGAGAACATCCACGATTTGTTCTGCAT
GGTGCTGCAGGATACCTGGCTGTTTGAAGGCACAATCAGGGAGAACCTGATCTACAATCAGCAGAATATCACAGACGAGA
AGCTTGTAGAAGCCTGCAAGGCGGTTGGCCTGCACCGCTTCATTCAGAGCCTTAGCGACGGATATGATACCGTCCTGAAC
GATAAGGTCAACCTGTCCGCCGGACAAAAGCAGCAGCTGACCATTGCCCGCGCGATGCTGAAGGATGCACCGATGCTCAT
TCTTGACGAAGCTACCAGCTCCGTGGATACCCGGACTGAGCTGCTGATTCAGCAGGCGATGGATCAGCTGATGGAGGGCA
GAACCTCCTTCGTCATCGCCCACCGGCTGTCCACGATCAAGAACGCCGATGTGATTCTGGTCCTGAAGGACGGCGATATT
CTGGAAAGCGGCAGCCATACAGAATTGCTGGCGAAGAACGGATTCTACGCCGAGCTGTATAACAGCCAGTTTGAGCAGGC
TTCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(366-513)

ABC transporter transmembrane region (ABC_membrane)

(28-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.959

98.469

0.551