Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NSS86_RS09350 Genome accession   NZ_CP150142
Coordinates   1836264..1836659 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus sp. FSL W8-0056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1831264..1841659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS86_RS09325 (NSS86_09325) thiE 1831863..1832504 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NSS86_RS09330 (NSS86_09330) thiM 1832506..1833297 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  NSS86_RS09335 (NSS86_09335) thiD 1833281..1834111 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NSS86_RS09340 (NSS86_09340) tenA 1834104..1834793 (-) 690 WP_000396077.1 thiaminase II -
  NSS86_RS09345 (NSS86_09345) sceD 1835180..1835875 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  NSS86_RS09350 (NSS86_09350) ssb 1836264..1836659 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NSS86_RS09355 (NSS86_09355) - 1836853..1837293 (+) 441 WP_000846746.1 YwpF-like family protein -
  NSS86_RS09360 (NSS86_09360) fabZ 1837352..1837792 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSS86_RS09365 (NSS86_09365) murA 1837826..1839091 (-) 1266 WP_000358007.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NSS86_RS09370 (NSS86_09370) - 1839202..1839435 (-) 234 WP_000384523.1 DUF1146 family protein -
  NSS86_RS09375 (NSS86_09375) - 1839567..1839659 (-) 93 WP_001790611.1 hypothetical protein -
  NSS86_RS09380 (NSS86_09380) - 1839997..1840401 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=963182 NSS86_RS09350 WP_000932694.1 1836264..1836659(-) (ssb) [Staphylococcus sp. FSL W8-0056]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=963182 NSS86_RS09350 WP_000932694.1 1836264..1836659(-) (ssb) [Staphylococcus sp. FSL W8-0056]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992