Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NSS86_RS03540 Genome accession   NZ_CP150142
Coordinates   680931..681917 (+) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus sp. FSL W8-0056     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 675931..686917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS86_RS03515 (NSS86_03515) opp4B 676145..677107 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  NSS86_RS03520 (NSS86_03520) opp4C 677119..678000 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  NSS86_RS03525 (NSS86_03525) trpS 678042..679031 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NSS86_RS03530 (NSS86_03530) spxA 679325..679720 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NSS86_RS03535 (NSS86_03535) mecA 680091..680810 (+) 720 WP_001217728.1 adaptor protein MecA -
  NSS86_RS03540 (NSS86_03540) coiA 680931..681917 (+) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  NSS86_RS03545 (NSS86_03545) pepF 681965..683773 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  NSS86_RS03550 (NSS86_03550) yjbH 684233..685039 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NSS86_RS03555 (NSS86_03555) - 685062..685427 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NSS86_RS03560 (NSS86_03560) - 685531..686124 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NSS86_RS03565 (NSS86_03565) - 686310..686657 (+) 348 WP_001242103.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=963155 NSS86_RS03540 WP_000959282.1 680931..681917(+) (coiA) [Staphylococcus sp. FSL W8-0056]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=963155 NSS86_RS03540 WP_000959282.1 680931..681917(+) (coiA) [Staphylococcus sp. FSL W8-0056]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976