Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WKF26_RS03805 Genome accession   NZ_CP150139
Coordinates   859275..860141 (-) Length   288 a.a.
NCBI ID   WP_369989692.1    Uniprot ID   -
Organism   Pseudomonas xanthosomatis strain YZ03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 854275..865141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKF26_RS03770 - 854480..854788 (-) 309 WP_336336009.1 transposase -
  WKF26_RS03775 - 854884..856179 (-) 1296 WP_217841776.1 NAD(P)/FAD-dependent oxidoreductase -
  WKF26_RS03780 - 856264..856437 (-) 174 WP_217841777.1 DUF3094 family protein -
  WKF26_RS03785 - 856570..857199 (-) 630 WP_369989688.1 DUF1780 domain-containing protein -
  WKF26_RS03790 - 857318..858001 (+) 684 WP_369989689.1 energy-coupling factor ABC transporter permease -
  WKF26_RS03795 yacG 858455..858655 (-) 201 WP_217841780.1 DNA gyrase inhibitor YacG -
  WKF26_RS03800 coaE 858652..859275 (-) 624 WP_369989691.1 dephospho-CoA kinase -
  WKF26_RS03805 pilD 859275..860141 (-) 867 WP_369989692.1 A24 family peptidase Machinery gene
  WKF26_RS03810 - 860144..861352 (-) 1209 WP_369989693.1 type II secretion system F family protein -
  WKF26_RS03815 - 861570..861980 (+) 411 WP_369989694.1 pilin -
  WKF26_RS03825 - 862356..863510 (+) 1155 WP_369989695.1 Fic family protein -
  WKF26_RS03835 - 864596..864919 (-) 324 WP_369989697.1 hypothetical protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31662.86 Da        Isoelectric Point: 7.9759

>NTDB_id=963125 WKF26_RS03805 WP_369989692.1 859275..860141(-) (pilD) [Pseudomonas xanthosomatis strain YZ03]
MNAWTVIVDHPPFFYCLAALLGLLVGSFINVLAYRLPVMLERQWQREAQEVLGLPQTLHERFDLCLPASRCPHCQHRIRA
WENIPVLSYLALRGRCSACKGRIGVRYPLVELGSALLSLLVAWHFGPGLAALLVMLLTWGLLALSLIDADHQLLPDVLVL
PLLWLGLLVNAFGLLVPLSDALWGAVAGYLSLWSVYWVFRLLTGKEGMGFGDFKLLAMLGAWGGWQILPVTLMGASVAGA
LIGLVLLRLQRAQRGTPLPFGPYLAIAGWIALLWGDEIVASYLQLLGP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=963125 WKF26_RS03805 WP_369989692.1 859275..860141(-) (pilD) [Pseudomonas xanthosomatis strain YZ03]
ATGAATGCCTGGACCGTTATCGTCGACCATCCGCCCTTCTTCTATTGCCTGGCTGCGCTGCTGGGGTTGCTGGTGGGCAG
CTTCATCAATGTGCTGGCGTACCGCTTGCCGGTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAAGAGGTGCTGGGGC
TGCCGCAAACGCTGCACGAGCGCTTCGACCTGTGCCTGCCGGCCTCACGCTGCCCGCACTGCCAGCACCGTATTCGGGCG
TGGGAGAACATTCCGGTGTTGAGCTACCTGGCGCTGCGCGGGCGTTGCTCGGCGTGCAAGGGGCGCATTGGCGTGCGCTA
CCCGCTGGTGGAGCTGGGCAGCGCGTTGCTGTCGTTGCTGGTGGCCTGGCATTTCGGGCCGGGGCTGGCGGCGCTGCTGG
TGATGCTGCTGACCTGGGGGTTGCTGGCGCTTAGCCTGATCGATGCCGACCACCAACTGTTGCCGGATGTGCTGGTGTTG
CCGTTGCTGTGGCTGGGGCTGTTGGTAAATGCCTTCGGCCTGCTGGTGCCGCTAAGCGATGCACTGTGGGGCGCGGTGGC
GGGTTACCTGAGCCTGTGGTCGGTGTACTGGGTGTTCCGCCTGCTGACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA
AGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATTTTGCCGGTAACCTTGATGGGCGCGTCGGTTGCCGGGGCA
CTGATCGGGCTGGTGTTGCTGCGCCTGCAACGCGCGCAGCGGGGTACGCCGCTGCCTTTTGGGCCTTACCTGGCGATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCTTACCTGCAACTACTTGGCCCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.286

97.222

0.528
  pilD Neisseria gonorrhoeae MS11

51.673

93.403

0.483
  pilD Acinetobacter baumannii D1279779

50.554

94.097

0.476
  pilD Vibrio campbellii strain DS40M4

48.746

96.875

0.472
  pilD Acinetobacter nosocomialis M2

49.446

94.097

0.465