Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   WMC18_RS01775 Genome accession   NZ_CP150130
Coordinates   329398..329796 (-) Length   132 a.a.
NCBI ID   WP_003156589.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-482     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 324398..334796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMC18_RS01740 (WMC18_01740) - 325397..325561 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  WMC18_RS01745 (WMC18_01745) - 325675..326877 (+) 1203 WP_014304313.1 GTP-binding protein -
  WMC18_RS01750 (WMC18_01750) - 326942..328078 (+) 1137 WP_107994550.1 zinc-dependent alcohol dehydrogenase -
  WMC18_RS01755 (WMC18_01755) - 328093..328527 (+) 435 WP_003156592.1 RDD family protein -
  WMC18_RS01760 (WMC18_01760) - 328645..328920 (+) 276 WP_369719109.1 YckD family protein -
  WMC18_RS01765 (WMC18_01765) - 329024..329140 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  WMC18_RS01770 (WMC18_01770) - 329139..329357 (+) 219 Protein_308 family 1 glycosylhydrolase -
  WMC18_RS01775 (WMC18_01775) nin/comJ 329398..329796 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  WMC18_RS01780 (WMC18_01780) nucA/comI 329818..330255 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  WMC18_RS01785 (WMC18_01785) hxlB 330614..331171 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  WMC18_RS01790 (WMC18_01790) hxlA 331168..331803 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  WMC18_RS01795 (WMC18_01795) - 332035..332397 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15077.06 Da        Isoelectric Point: 4.6564

>NTDB_id=963020 WMC18_RS01775 WP_003156589.1 329398..329796(-) (nin/comJ) [Bacillus velezensis strain SEC-482]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EVVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=963020 WMC18_RS01775 WP_003156589.1 329398..329796(-) (nin/comJ) [Bacillus velezensis strain SEC-482]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGTTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

78.295

97.727

0.765