Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | OW489_RS00275 | Genome accession | NZ_AP026446 |
| Coordinates | 61673..62248 (+) | Length | 191 a.a. |
| NCBI ID | WP_120857606.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56673..67248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS00250 (CHC155_00510) | uvrD | 57364..59409 (+) | 2046 | WP_162979449.1 | DNA helicase UvrD | - |
| OW489_RS00255 (CHC155_00520) | flgA | 59406..60062 (+) | 657 | WP_120857612.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| OW489_RS00260 (CHC155_00530) | - | 60072..60635 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| OW489_RS00265 (CHC155_00540) | coaD | 60635..61108 (+) | 474 | WP_120857610.1 | pantetheine-phosphate adenylyltransferase | - |
| OW489_RS00270 (CHC155_00550) | tmk | 61110..61685 (+) | 576 | WP_120857608.1 | dTMP kinase | - |
| OW489_RS00275 (CHC155_00560) | comFC | 61673..62248 (+) | 576 | WP_120857606.1 | ComF family protein | Machinery gene |
| OW489_RS00280 (CHC155_00570) | - | 62282..64318 (+) | 2037 | WP_121097922.1 | N-6 DNA methylase | - |
| OW489_RS00285 (CHC155_00580) | - | 64315..65523 (+) | 1209 | WP_267286014.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21408.99 Da Isoelectric Point: 8.6712
>NTDB_id=96300 OW489_RS00275 WP_120857606.1 61673..62248(+) (comFC) [Helicobacter pylori strain CHC155]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTIKYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTIKYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=96300 OW489_RS00275 WP_120857606.1 61673..62248(+) (comFC) [Helicobacter pylori strain CHC155]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCTTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCCACTAATACTATCAAATATGCCGGGAAAAGCTTAG
AATTTCGCACCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGATATTATT
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCTTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCCACTAATACTATCAAATATGCCGGGAAAAGCTTAG
AATTTCGCACCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGATATTATT
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |