Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WMO34_RS04780 Genome accession   NZ_CP150121
Coordinates   1017663..1019057 (-) Length   464 a.a.
NCBI ID   WP_024711611.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain Selingue 50     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012663..1024057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMO34_RS04755 (WMO34_04745) - 1012911..1013540 (+) 630 WP_024711608.1 hypothetical protein -
  WMO34_RS04760 (WMO34_04750) - 1013510..1015036 (+) 1527 WP_044749930.1 spermidine synthase -
  WMO34_RS04765 (WMO34_04755) pilB 1015071..1016804 (+) 1734 WP_024711610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WMO34_RS04770 (WMO34_04760) - 1016813..1017322 (-) 510 WP_179208360.1 Fic family protein -
  WMO34_RS04775 (WMO34_04765) - 1017384..1017590 (-) 207 WP_082348324.1 YhfG family protein -
  WMO34_RS04780 (WMO34_04770) pilR 1017663..1019057 (-) 1395 WP_024711611.1 sigma-54 dependent transcriptional regulator Regulator
  WMO34_RS04785 (WMO34_04775) - 1019388..1021001 (-) 1614 WP_014504316.1 PAS domain-containing sensor histidine kinase -
  WMO34_RS04790 (WMO34_04780) sucC 1021235..1022404 (+) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  WMO34_RS04795 (WMO34_04785) sucD 1022429..1023304 (+) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  WMO34_RS04800 (WMO34_04790) - 1023478..1023732 (+) 255 Protein_916 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50201.60 Da        Isoelectric Point: 6.3803

>NTDB_id=962924 WMO34_RS04780 WP_024711611.1 1017663..1019057(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain Selingue 50]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=962924 WMO34_RS04780 WP_024711611.1 1017663..1019057(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain Selingue 50]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAGCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489