Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WMO35_RS05475 Genome accession   NZ_CP150119
Coordinates   1186741..1188132 (-) Length   463 a.a.
NCBI ID   WP_041183413.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain MD-Ivory-1-B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181741..1193132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMO35_RS05450 (WMO35_05455) - 1181989..1182618 (+) 630 WP_024711608.1 hypothetical protein -
  WMO35_RS05455 (WMO35_05460) - 1182588..1184114 (+) 1527 WP_047340101.1 spermidine synthase -
  WMO35_RS05460 (WMO35_05465) pilB 1184149..1185882 (+) 1734 WP_014504319.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WMO35_RS05465 (WMO35_05470) - 1185891..1186400 (-) 510 WP_178385941.1 Fic family protein -
  WMO35_RS05470 (WMO35_05475) - 1186462..1186668 (-) 207 WP_076342549.1 YhfG family protein -
  WMO35_RS05475 (WMO35_05480) pilR 1186741..1188132 (-) 1392 WP_041183413.1 sigma-54 dependent transcriptional regulator Regulator
  WMO35_RS05480 (WMO35_05485) - 1188463..1190076 (-) 1614 WP_014504316.1 PAS domain-containing sensor histidine kinase -
  WMO35_RS05485 (WMO35_05490) sucC 1190310..1191479 (+) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  WMO35_RS05490 (WMO35_05495) sucD 1191504..1192379 (+) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  WMO35_RS05495 (WMO35_05500) - 1192553..1192795 (+) 243 Protein_1043 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50143.48 Da        Isoelectric Point: 6.3271

>NTDB_id=962889 WMO35_RS05475 WP_041183413.1 1186741..1188132(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain MD-Ivory-1-B]
MSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRLLGDSSAMESLRATIGKVARS
QAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHRDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAAV
EPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=962889 WMO35_RS05475 WP_041183413.1 1186741..1188132(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain MD-Ivory-1-B]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCAGCTCCGCCGCCGCCAC
CTGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGT
CAGGCACCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACG
CGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTC
CGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAGGGACCTGGGCGAGCTGGTCTCCGACGGCCGTTTTC
GACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAG
CTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGC
ACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAGACG
ACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCCGTG
GAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGC
GATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGAGCGCTGC
GTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.203

99.784

0.631
  pilR Acinetobacter baumannii strain A118

48.701

99.784

0.486