Detailed information
Bioinformatically predicted
Overview
| Name | comL | Type | Machinery gene |
| Locus tag | AADG46_RS02080 | Genome accession | NZ_AP028804 |
| Coordinates | 430252..430977 (-) | Length | 241 a.a. |
| NCBI ID | WP_000877198.1 | Uniprot ID | Q9KU21 |
| Organism | Vibrio cholerae strain VN152 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 425252..435977
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG46_RS02065 (VNVC001_03600) | - | 426893..427927 (-) | 1035 | WP_162812411.1 | PotD/PotF family extracellular solute-binding protein | - |
| AADG46_RS02070 (VNVC001_03610) | pheA | 428109..429284 (-) | 1176 | WP_000130286.1 | prephenate dehydratase | - |
| AADG46_RS02075 (VNVC001_03620) | raiA | 429524..429850 (-) | 327 | WP_000700176.1 | ribosome-associated translation inhibitor RaiA | - |
| AADG46_RS02080 (VNVC001_03630) | comL | 430252..430977 (-) | 726 | WP_000877198.1 | outer membrane protein assembly factor BamD | Machinery gene |
| AADG46_RS02085 (VNVC001_03640) | rluD | 431132..432106 (+) | 975 | WP_000941106.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| AADG46_RS02090 (VNVC001_03650) | pgeF | 432109..432831 (+) | 723 | WP_000602840.1 | peptidoglycan editing factor PgeF | - |
| AADG46_RS02095 (VNVC001_03660) | clpC | 432956..435529 (+) | 2574 | WP_138041364.1 | ATP-dependent chaperone ClpB | Regulator |
Sequence
Protein
Download Length: 241 a.a. Molecular weight: 27875.68 Da Isoelectric Point: 5.1660
>NTDB_id=96288 AADG46_RS02080 WP_000877198.1 430252..430977(-) (comL) [Vibrio cholerae strain VN152]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L
Nucleotide
Download Length: 726 bp
>NTDB_id=96288 AADG46_RS02080 WP_000877198.1 430252..430977(-) (comL) [Vibrio cholerae strain VN152]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACTATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAACGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATCCAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACTATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAACGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATCCAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comL | Neisseria meningitidis MC58 |
38.589 |
100 |
0.386 |
| comL | Neisseria gonorrhoeae MS11 |
37.759 |
100 |
0.378 |