Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   WHK83_RS16885 Genome accession   NZ_CP150097
Coordinates   3586876..3588444 (+) Length   522 a.a.
NCBI ID   WP_001160339.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3581876..3593444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS16865 - 3582366..3583667 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  WHK83_RS16870 thrC 3583723..3584862 (+) 1140 WP_000063593.1 threonine synthase -
  WHK83_RS16875 pbpG 3584971..3586017 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  WHK83_RS16880 - 3586230..3586865 (+) 636 WP_000633799.1 response regulator -
  WHK83_RS16885 pilS 3586876..3588444 (+) 1569 WP_001160339.1 PAS domain-containing sensor histidine kinase Regulator
  WHK83_RS16890 pilR 3588469..3589890 (+) 1422 WP_023897413.1 sigma-54 dependent transcriptional regulator Regulator
  WHK83_RS16895 - 3589894..3591078 (-) 1185 WP_000939109.1 S41 family peptidase -
  WHK83_RS16900 gpmI 3591094..3592641 (-) 1548 WP_023897414.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59233.72 Da        Isoelectric Point: 6.4995

>NTDB_id=962857 WHK83_RS16885 WP_001160339.1 3586876..3588444(+) (pilS) [Acinetobacter baumannii strain HAU425]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVKHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNATDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=962857 WHK83_RS16885 WP_001160339.1 3586876..3588444(+) (pilS) [Acinetobacter baumannii strain HAU425]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTAGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGGTATTCCCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
TTTACTCTATGTAATTGCCATCTTTACTTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCCGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTTTTATTTTTTGTGGTTCACGGTATTGGCCAAATTGCTGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTCTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATACCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGACTTGCTCGTA
GTGAAAGAACACATCCTATCCAGATCGATGTAAAACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCACCGACTCGCCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.425

100

0.994