Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WHK83_RS15275 Genome accession   NZ_CP150097
Coordinates   3240370..3240780 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain HAU425     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3235370..3245780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS15245 - 3235456..3235725 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  WHK83_RS15250 rapZ 3235722..3236573 (-) 852 WP_000821671.1 RNase adapter RapZ -
  WHK83_RS15255 panC 3236596..3237444 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  WHK83_RS15260 panB 3237448..3238257 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  WHK83_RS15265 folK 3238303..3238785 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  WHK83_RS15270 pcnB 3238782..3240245 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  WHK83_RS15275 comEA 3240370..3240780 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  WHK83_RS15280 mazG 3240749..3241555 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  WHK83_RS15285 - 3241667..3242440 (+) 774 WP_406859451.1 SDR family oxidoreductase -
  WHK83_RS15290 - 3242485..3244791 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=962846 WHK83_RS15275 WP_002041921.1 3240370..3240780(-) (comEA) [Acinetobacter baumannii strain HAU425]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=962846 WHK83_RS15275 WP_002041921.1 3240370..3240780(-) (comEA) [Acinetobacter baumannii strain HAU425]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382