Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   WHK83_RS15560 Genome accession   NZ_CP150097
Coordinates   3303912..3304712 (-) Length   266 a.a.
NCBI ID   WP_004738086.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298912..3309712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS15540 - 3299977..3300675 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  WHK83_RS15545 hisS 3300704..3301996 (-) 1293 WP_000095262.1 histidine--tRNA ligase -
  WHK83_RS15550 ispG 3301993..3303108 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  WHK83_RS15555 - 3303130..3303921 (-) 792 WP_000405163.1 RodZ domain-containing protein -
  WHK83_RS15560 pilF 3303912..3304712 (-) 801 WP_004738086.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  WHK83_RS15565 rlmN 3304728..3305960 (-) 1233 WP_023897327.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  WHK83_RS15570 ndk 3306083..3306514 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  WHK83_RS15575 iscX 3306628..3306828 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  WHK83_RS15580 - 3306928..3307479 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  WHK83_RS15585 - 3307504..3308802 (-) 1299 WP_086264052.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30094.44 Da        Isoelectric Point: 9.2307

>NTDB_id=962847 WHK83_RS15560 WP_004738086.1 3303912..3304712(-) (pilF) [Acinetobacter baumannii strain HAU425]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=962847 WHK83_RS15560 WP_004738086.1 3303912..3304712(-) (pilF) [Acinetobacter baumannii strain HAU425]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

100

100

1
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726