Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   WHK83_RS09955 Genome accession   NZ_CP150097
Coordinates   2136729..2137109 (-) Length   126 a.a.
NCBI ID   WP_023896833.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131729..2142109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS09925 tadA 2131847..2132351 (-) 505 Protein_1934 tRNA adenosine(34) deaminase TadA -
  WHK83_RS09930 - 2132358..2133482 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  WHK83_RS09935 ung 2133479..2134192 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  WHK83_RS09940 - 2134243..2134839 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  WHK83_RS09945 gspK 2135069..2136028 (-) 960 WP_023896831.1 type II secretion system minor pseudopilin GspK -
  WHK83_RS09950 xcpW 2136028..2136729 (-) 702 WP_023896832.1 type II secretion system minor pseudopilin GspJ Machinery gene
  WHK83_RS09955 xcpV 2136729..2137109 (-) 381 WP_023896833.1 type II secretion system minor pseudopilin GspI Machinery gene
  WHK83_RS09960 - 2137099..2137653 (-) 555 WP_000841373.1 type II secretion system protein -
  WHK83_RS09965 - 2137663..2138271 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  WHK83_RS09970 - 2138309..2139082 (-) 774 WP_000497298.1 TatD family hydrolase -
  WHK83_RS09975 - 2139100..2139441 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  WHK83_RS09980 - 2139453..2140433 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  WHK83_RS09985 kdsB 2140445..2141206 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14064.25 Da        Isoelectric Point: 8.4453

>NTDB_id=962839 WHK83_RS09955 WP_023896833.1 2136729..2137109(-) (xcpV) [Acinetobacter baumannii strain HAU425]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQDETWQI
DKSAESTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKTK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=962839 WHK83_RS09955 WP_023896833.1 2136729..2137109(-) (xcpV) [Acinetobacter baumannii strain HAU425]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAGGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGATGAAACTTGGCAAATT
GATAAGTCAGCTGAATCGACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAACAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

97.619

100

0.976