Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   WHK83_RS09950 Genome accession   NZ_CP150097
Coordinates   2136028..2136729 (-) Length   233 a.a.
NCBI ID   WP_023896832.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131028..2141729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS09920 - 2131334..2131777 (-) 444 WP_001246675.1 SRPBCC family protein -
  WHK83_RS09925 tadA 2131847..2132351 (-) 505 Protein_1934 tRNA adenosine(34) deaminase TadA -
  WHK83_RS09930 - 2132358..2133482 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  WHK83_RS09935 ung 2133479..2134192 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  WHK83_RS09940 - 2134243..2134839 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  WHK83_RS09945 gspK 2135069..2136028 (-) 960 WP_023896831.1 type II secretion system minor pseudopilin GspK -
  WHK83_RS09950 xcpW 2136028..2136729 (-) 702 WP_023896832.1 type II secretion system minor pseudopilin GspJ Machinery gene
  WHK83_RS09955 xcpV 2136729..2137109 (-) 381 WP_023896833.1 type II secretion system minor pseudopilin GspI Machinery gene
  WHK83_RS09960 - 2137099..2137653 (-) 555 WP_000841373.1 type II secretion system protein -
  WHK83_RS09965 - 2137663..2138271 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  WHK83_RS09970 - 2138309..2139082 (-) 774 WP_000497298.1 TatD family hydrolase -
  WHK83_RS09975 - 2139100..2139441 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  WHK83_RS09980 - 2139453..2140433 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  WHK83_RS09985 kdsB 2140445..2141206 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26641.66 Da        Isoelectric Point: 9.5501

>NTDB_id=962838 WHK83_RS09950 WP_023896832.1 2136028..2136729(-) (xcpW) [Acinetobacter baumannii strain HAU425]
MIKNKYIHIRSIDSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEMHLFALQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=962838 WHK83_RS09950 WP_023896832.1 2136028..2136729(-) (xcpW) [Acinetobacter baumannii strain HAU425]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAATGCATTTATTTGCATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGAGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983