Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   WHK83_RS02070 Genome accession   NZ_CP150097
Coordinates   445952..446587 (-) Length   211 a.a.
NCBI ID   WP_000472269.1    Uniprot ID   A0A383KXM5
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440952..451587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS02035 mlaE 441288..442064 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  WHK83_RS02040 - 442064..442744 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  WHK83_RS02045 - 442771..443412 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  WHK83_RS02050 - 443424..443711 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  WHK83_RS02055 - 443781..444794 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  WHK83_RS02060 - 444952..445533 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  WHK83_RS02065 - 445548..445949 (+) 402 WP_000849704.1 NUDIX domain-containing protein -
  WHK83_RS02070 comF 445952..446587 (-) 636 WP_000472269.1 ComF family protein Machinery gene
  WHK83_RS02075 recG 446580..448625 (-) 2046 WP_023896169.1 ATP-dependent DNA helicase RecG -
  WHK83_RS02080 - 448646..449461 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  WHK83_RS02085 adeT2 449541..450527 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24521.60 Da        Isoelectric Point: 9.5702

>NTDB_id=962830 WHK83_RS02070 WP_000472269.1 445952..446587(-) (comF) [Acinetobacter baumannii strain HAU425]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=962830 WHK83_RS02070 WP_000472269.1 445952..446587(-) (comF) [Acinetobacter baumannii strain HAU425]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(160-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A383KXM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

100

100

1
  comF Acinetobacter baumannii strain A118

99.052

100

0.991