Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   WHK83_RS01585 Genome accession   NZ_CP150097
Coordinates   342563..343090 (+) Length   175 a.a.
NCBI ID   WP_000695067.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337563..348090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS01570 pilM 340116..341174 (+) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  WHK83_RS01575 pilN 341174..341815 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  WHK83_RS01580 pilO 341812..342552 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  WHK83_RS01585 pilP 342563..343090 (+) 528 WP_000695067.1 pilus assembly protein PilP Machinery gene
  WHK83_RS01590 pilQ 343153..345318 (+) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  WHK83_RS01595 aroK 345330..345899 (+) 570 WP_000643712.1 shikimate kinase AroK -
  WHK83_RS01600 aroB 345928..347010 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  WHK83_RS01605 - 347026..347901 (+) 876 WP_000218807.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19409.60 Da        Isoelectric Point: 8.9898

>NTDB_id=962820 WHK83_RS01585 WP_000695067.1 342563..343090(+) (pilP) [Acinetobacter baumannii strain HAU425]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIESAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=962820 WHK83_RS01585 WP_000695067.1 342563..343090(+) (pilP) [Acinetobacter baumannii strain HAU425]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAATCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709