Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   WHK83_RS01570 Genome accession   NZ_CP150097
Coordinates   340116..341174 (+) Length   352 a.a.
NCBI ID   WP_031961398.1    Uniprot ID   A0AAD2U6A0
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335116..346174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS01555 - 336222..336554 (+) 333 WP_000169602.1 hypothetical protein -
  WHK83_RS01560 - 336557..337381 (+) 825 WP_023896133.1 putative RNA methyltransferase -
  WHK83_RS01565 ponA 337399..339954 (-) 2556 WP_043960309.1 penicillin-binding protein PBP1a -
  WHK83_RS01570 pilM 340116..341174 (+) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  WHK83_RS01575 pilN 341174..341815 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  WHK83_RS01580 pilO 341812..342552 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  WHK83_RS01585 pilP 342563..343090 (+) 528 WP_000695067.1 pilus assembly protein PilP Machinery gene
  WHK83_RS01590 pilQ 343153..345318 (+) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  WHK83_RS01595 aroK 345330..345899 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39046.61 Da        Isoelectric Point: 4.4657

>NTDB_id=962817 WHK83_RS01570 WP_031961398.1 340116..341174(+) (pilM) [Acinetobacter baumannii strain HAU425]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDEEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=962817 WHK83_RS01570 WP_031961398.1 340116..341174(+) (pilM) [Acinetobacter baumannii strain HAU425]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGAAGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCCGATCGTCTTG
CGAATCCAAATCGTGTAAATGTACTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTCTTTGGTGGCAAGCAACTTACGCTTGAAATTCAAAGTCGTTATGGCTTGTCTTTAGAAGAA
GCAAGCCGAGCGAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.716

100

0.997
  comM Acinetobacter nosocomialis M2

98.864

100

0.989
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423