Detailed information NTG0096265

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AABJ45_RS11420
• Genome accession: NZ_AP028611
• Coordinates: 2226235..2227332 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266660.1
• Uniprot ID: Q97N44
• Organism: Streptococcus pneumoniae strain Sep6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2221235..2232332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ45_RS11395 (TKY121527_22230)	pgsA	2221756..2222301 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AABJ45_RS11400 (TKY121527_22240)	rodZ	2222312..2223133 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
AABJ45_RS11405 (TKY121527_22250)	-	2223175..2224458 (-)	1284	WP_000170214.1	pitrilysin family protein	-
AABJ45_RS11410 (TKY121527_22260)	-	2224455..2225705 (-)	1251	WP_000424267.1	pitrilysin family protein	-
AABJ45_RS11415 (TKY121527_22270)	yaaA	2225864..2226232 (+)	369	WP_000455867.1	S4 domain-containing protein YaaA	-
AABJ45_RS11420 (TKY121527_22280)	recF	2226235..2227332 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
AABJ45_RS11425 (TKY121527_22290)	guaB	2227383..2228861 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
AABJ45_RS11430 (TKY121527_22300)	trpS	2229013..2230038 (-)	1026	WP_338372084.1	tryptophan--tRNA ligase	-
AABJ45_RS11435 (TKY121527_22310)	-	2230244..2231866 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41900.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=96265 AABJ45_RS11420 WP_000266660.1 2226235..2227332(+) (recF) [Streptococcus pneumoniae strain Sep6]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=96265 AABJ45_RS11420 WP_000266660.1 2226235..2227332(+) (recF) [Streptococcus pneumoniae strain Sep6]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGTCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q97N44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46