Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXQ80_RS05740 | Genome accession | NZ_CP149974 |
| Coordinates | 1158549..1159019 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934764.1 | Uniprot ID | A0A9P4DKA4 |
| Organism | Staphylococcus aureus strain BSN125 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1148701..1191909 | 1158549..1159019 | within | 0 |
Gene organization within MGE regions
Location: 1148701..1191909
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXQ80_RS05665 (UXQ80_05665) | - | 1148701..1150086 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| UXQ80_RS05670 (UXQ80_05670) | - | 1150293..1150973 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| UXQ80_RS05675 (UXQ80_05675) | - | 1151191..1151829 (-) | 639 | WP_000874710.1 | XRE family transcriptional regulator | - |
| UXQ80_RS05680 (UXQ80_05680) | - | 1152020..1152274 (+) | 255 | WP_001106628.1 | helix-turn-helix domain-containing protein | - |
| UXQ80_RS05685 (UXQ80_05685) | - | 1152290..1153078 (+) | 789 | WP_001148577.1 | phage antirepressor KilAC domain-containing protein | - |
| UXQ80_RS05690 (UXQ80_05690) | - | 1153095..1153289 (+) | 195 | WP_001148857.1 | hypothetical protein | - |
| UXQ80_RS05695 (UXQ80_05695) | - | 1153471..1153701 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| UXQ80_RS05700 (UXQ80_05700) | - | 1153760..1153888 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| UXQ80_RS05705 (UXQ80_05705) | - | 1153881..1154042 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| UXQ80_RS05710 (UXQ80_05710) | - | 1154137..1154439 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| UXQ80_RS05715 (UXQ80_05715) | - | 1154444..1154704 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| UXQ80_RS05720 (UXQ80_05720) | - | 1154713..1154976 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXQ80_RS05725 (UXQ80_05725) | - | 1154985..1156928 (+) | 1944 | WP_153098890.1 | AAA family ATPase | - |
| UXQ80_RS05730 (UXQ80_05730) | - | 1156930..1157850 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| UXQ80_RS05735 (UXQ80_05735) | - | 1157931..1158548 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| UXQ80_RS05740 (UXQ80_05740) | ssbA | 1158549..1159019 (+) | 471 | WP_000934764.1 | single-stranded DNA-binding protein | Machinery gene |
| UXQ80_RS05745 (UXQ80_05745) | - | 1159049..1159933 (+) | 885 | WP_000148317.1 | DnaD domain protein | - |
| UXQ80_RS05750 (UXQ80_05750) | - | 1159940..1160158 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXQ80_RS05755 (UXQ80_05755) | - | 1160167..1160571 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXQ80_RS05760 (UXQ80_05760) | - | 1160584..1160952 (+) | 369 | WP_001140280.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXQ80_RS05765 (UXQ80_05765) | - | 1160956..1161198 (+) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| UXQ80_RS05770 (UXQ80_05770) | - | 1161239..1161490 (+) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| UXQ80_RS05775 (UXQ80_05775) | - | 1161480..1161662 (+) | 183 | WP_000028425.1 | hypothetical protein | - |
| UXQ80_RS05780 (UXQ80_05780) | - | 1161655..1162191 (+) | 537 | WP_000185704.1 | dUTPase | - |
| UXQ80_RS05785 (UXQ80_05785) | - | 1162228..1162401 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| UXQ80_RS05790 (UXQ80_05790) | - | 1162418..1162624 (+) | 207 | WP_000195779.1 | DUF1381 domain-containing protein | - |
| UXQ80_RS05795 (UXQ80_05795) | - | 1162621..1163004 (+) | 384 | WP_000592229.1 | hypothetical protein | - |
| UXQ80_RS05800 (UXQ80_05800) | rinB | 1163004..1163177 (+) | 174 | WP_000595244.1 | transcriptional activator RinB | - |
| UXQ80_RS05805 (UXQ80_05805) | - | 1163178..1163324 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| UXQ80_RS05810 (UXQ80_05810) | - | 1163348..1163770 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| UXQ80_RS05815 (UXQ80_05815) | - | 1163957..1164397 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXQ80_RS05820 (UXQ80_05820) | - | 1164384..1165661 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| UXQ80_RS05825 (UXQ80_05825) | - | 1165672..1167210 (+) | 1539 | WP_031766723.1 | phage portal protein | - |
| UXQ80_RS05830 (UXQ80_05830) | - | 1167217..1168212 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| UXQ80_RS05835 (UXQ80_05835) | - | 1168285..1168455 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| UXQ80_RS05840 (UXQ80_05840) | - | 1168483..1168570 (+) | 88 | Protein_1136 | hypothetical protein | - |
| UXQ80_RS05845 (UXQ80_05845) | - | 1168564..1169184 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| UXQ80_RS05850 (UXQ80_05850) | - | 1169198..1170172 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| UXQ80_RS05855 (UXQ80_05855) | - | 1170194..1170481 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| UXQ80_RS05860 (UXQ80_05860) | - | 1170490..1170822 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| UXQ80_RS05865 (UXQ80_05865) | - | 1170819..1171121 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| UXQ80_RS05870 (UXQ80_05870) | - | 1171121..1171468 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXQ80_RS05875 (UXQ80_05875) | - | 1171480..1171863 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| UXQ80_RS05880 (UXQ80_05880) | - | 1171882..1172463 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| UXQ80_RS05885 (UXQ80_05885) | - | 1172525..1172890 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| UXQ80_RS05890 (UXQ80_05890) | - | 1172920..1173264 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXQ80_RS05895 (UXQ80_05895) | - | 1173281..1176745 (+) | 3465 | WP_031770185.1 | membrane protein | - |
| UXQ80_RS05900 (UXQ80_05900) | - | 1176758..1177705 (+) | 948 | WP_000350687.1 | phage tail family protein | - |
| UXQ80_RS05905 (UXQ80_05905) | - | 1177714..1179615 (+) | 1902 | WP_000156416.1 | SGNH/GDSL hydrolase family protein | - |
| UXQ80_RS05910 (UXQ80_05910) | - | 1179630..1181540 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| UXQ80_RS05915 (UXQ80_05915) | - | 1181540..1183363 (+) | 1824 | WP_000259596.1 | phage baseplate upper protein | - |
| UXQ80_RS05920 (UXQ80_05920) | - | 1183363..1183740 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| UXQ80_RS05925 (UXQ80_05925) | - | 1183744..1183917 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| UXQ80_RS05930 (UXQ80_05930) | - | 1183957..1184256 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| UXQ80_RS05935 (UXQ80_05935) | - | 1184393..1186291 (+) | 1899 | WP_000524022.1 | glucosaminidase domain-containing protein | - |
| UXQ80_RS05940 (UXQ80_05940) | - | 1186304..1187542 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| UXQ80_RS05945 (UXQ80_05945) | - | 1187548..1187943 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| UXQ80_RS05950 (UXQ80_05950) | - | 1187999..1188436 (+) | 438 | WP_000354121.1 | phage holin | - |
| UXQ80_RS05955 (UXQ80_05955) | - | 1188417..1189862 (+) | 1446 | WP_001148125.1 | SH3 domain-containing protein | - |
| UXQ80_RS05960 (UXQ80_05960) | - | 1190371..1191165 (+) | 795 | WP_000238963.1 | HipA family kinase | - |
| UXQ80_RS05965 (UXQ80_05965) | - | 1191172..1191909 (+) | 738 | WP_000278830.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=962444 UXQ80_RS05740 WP_000934764.1 1158549..1159019(+) (ssbA) [Staphylococcus aureus strain BSN125]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=962444 UXQ80_RS05740 WP_000934764.1 1158549..1159019(+) (ssbA) [Staphylococcus aureus strain BSN125]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |