Detailed information NTG0962348

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WLO64_RS20455
• Genome accession: NZ_CP149942
• Coordinates: 4219749..4220549 (+)
• Length: 266 a.a.
• NCBI ID: WP_023319753.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain SHOUER1256
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4214749..4225549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WLO64_RS20420	gspH	4214902..4215417 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
WLO64_RS20425	gspI	4215414..4215779 (+)	366	WP_194007211.1	type II secretion system minor pseudopilin GspI	-
WLO64_RS20430	gspJ	4215776..4216372 (+)	597	WP_048294187.1	type II secretion system minor pseudopilin GspJ	-
WLO64_RS20435	gspK	4216369..4217349 (+)	981	WP_077259420.1	type II secretion system minor pseudopilin GspK	-
WLO64_RS20440	gspL	4217342..4218538 (+)	1197	WP_080841715.1	type II secretion system protein GspL	-
WLO64_RS20445	-	4218531..4219016 (+)	486	WP_043521988.1	type II secretion system protein M	-
WLO64_RS20450	-	4219006..4219734 (+)	729	WP_194007210.1	type II secretion system protein N	-
WLO64_RS20455	pilD	4219749..4220549 (+)	801	WP_023319753.1	A24 family peptidase	Machinery gene
WLO64_RS20460	hrpB	4220597..4223026 (-)	2430	WP_032455567.1	ATP-dependent helicase HrpB	-
WLO64_RS20465	thpR	4223099..4223635 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
WLO64_RS20470	sfsA	4223635..4224351 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
WLO64_RS20475	dksA	4224514..4224969 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29352.89 Da
• Isoelectric Point: 8.8894

>NTDB_id=962348 WLO64_RS20455 WP_023319753.1 4219749..4220549(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain SHOUER1256]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=962348 WLO64_RS20455 WP_023319753.1 4219749..4220549(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain SHOUER1256]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTAATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCGCCGGGACTGGCACTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425