Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   UXR22_RS08380 Genome accession   NZ_CP149937
Coordinates   1703875..1704561 (-) Length   228 a.a.
NCBI ID   WP_339075633.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN124     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698875..1709561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR22_RS08360 (UXR22_08360) rpsT 1699789..1700040 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  UXR22_RS08365 (UXR22_08365) holA 1700085..1701059 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  UXR22_RS08370 (UXR22_08370) comEC 1701116..1703317 (-) 2202 WP_001548978.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  UXR22_RS08375 (UXR22_08375) - 1703322..1703783 (-) 462 WP_000439693.1 ComE operon protein 2 -
  UXR22_RS08380 (UXR22_08380) comEA 1703875..1704561 (-) 687 WP_339075633.1 ComEA family DNA-binding protein Machinery gene
  UXR22_RS08385 (UXR22_08385) - 1704601..1705317 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  UXR22_RS08390 (UXR22_08390) rsfS 1705320..1705673 (-) 354 WP_001088022.1 ribosome silencing factor -
  UXR22_RS08395 (UXR22_08395) yqeK 1705674..1706258 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  UXR22_RS08400 (UXR22_08400) nadD 1706248..1706817 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  UXR22_RS08405 (UXR22_08405) yhbY 1706820..1707110 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  UXR22_RS08410 (UXR22_08410) aroE 1707114..1707920 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  UXR22_RS08415 (UXR22_08415) yqeH 1707934..1709034 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25881.53 Da        Isoelectric Point: 9.3305

>NTDB_id=962270 UXR22_RS08380 WP_339075633.1 1703875..1704561(-) (comEA) [Staphylococcus aureus strain BSN124]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQMEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=962270 UXR22_RS08380 WP_339075633.1 1703875..1704561(-) (comEA) [Staphylococcus aureus strain BSN124]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATGGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

96.916

99.561

0.965