Detailed information NTG0962156

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QN034_RS21925
• Genome accession: NZ_CP149895
• Coordinates: 4402061..4402861 (+)
• Length: 266 a.a.
• NCBI ID: WP_032414527.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 2310
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4397061..4407861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN034_RS21890 (QN034_21865)	gspH	4397217..4397732 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
QN034_RS21895 (QN034_21870)	gspI	4397729..4398094 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QN034_RS21900 (QN034_21875)	gspJ	4398091..4398687 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
QN034_RS21905 (QN034_21880)	gspK	4398684..4399670 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
QN034_RS21910 (QN034_21885)	gspL	4399657..4400850 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
QN034_RS21915 (QN034_21890)	-	4400843..4401328 (+)	486	WP_004145896.1	type II secretion system protein M	-
QN034_RS21920 (QN034_21895)	-	4401318..4402064 (+)	747	WP_004145897.1	type II secretion system protein N	-
QN034_RS21925 (QN034_21900)	pilD	4402061..4402861 (+)	801	WP_032414527.1	A24 family peptidase	Machinery gene
QN034_RS21930 (QN034_21905)	hrpB	4402909..4405338 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
QN034_RS21935 (QN034_21910)	thpR	4405411..4405947 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QN034_RS21940 (QN034_21915)	sfsA	4405947..4406663 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QN034_RS21945 (QN034_21920)	dksA	4406826..4407281 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=962156 QN034_RS21925 WP_032414527.1 4402061..4402861(+) (pilD) [Klebsiella pneumoniae strain 2310]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=962156 QN034_RS21925 WP_032414527.1 4402061..4402861(+) (pilD) [Klebsiella pneumoniae strain 2310]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421