Detailed information NTG0962109

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QN032_RS21120
• Genome accession: NZ_CP149888
• Coordinates: 4279625..4280425 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 3226
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4274625..4285425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN032_RS21085 (QN032_21050)	gspH	4274782..4275291 (+)	510	WP_363803860.1	type II secretion system minor pseudopilin GspH	-
QN032_RS21090 (QN032_21055)	gspI	4275294..4275659 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QN032_RS21095 (QN032_21060)	gspJ	4275656..4276252 (+)	597	WP_064146963.1	type II secretion system minor pseudopilin GspJ	-
QN032_RS21100 (QN032_21065)	gspK	4276249..4277235 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
QN032_RS21105 (QN032_21070)	gspL	4277222..4278414 (+)	1193	Protein_4139	type II secretion system protein GspL	-
QN032_RS21110 (QN032_21075)	-	4278407..4278892 (+)	486	WP_064146961.1	type II secretion system protein M	-
QN032_RS21115 (QN032_21080)	-	4278882..4279628 (+)	747	WP_064146960.1	type II secretion system protein N	-
QN032_RS21120 (QN032_21085)	pilD	4279625..4280425 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
QN032_RS21125 (QN032_21090)	hrpB	4280473..4282902 (-)	2430	WP_064146959.1	ATP-dependent helicase HrpB	-
QN032_RS21130 (QN032_21095)	thpR	4282975..4283511 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
QN032_RS21135 (QN032_21100)	sfsA	4283511..4284227 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QN032_RS21140 (QN032_21105)	dksA	4284390..4284845 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=962109 QN032_RS21120 WP_004145898.1 4279625..4280425(+) (pilD) [Klebsiella pneumoniae strain 3226]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=962109 QN032_RS21120 WP_004145898.1 4279625..4280425(+) (pilD) [Klebsiella pneumoniae strain 3226]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425