Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WGQ50_RS06460 Genome accession   NZ_CP149884
Coordinates   1258704..1259219 (-) Length   171 a.a.
NCBI ID   WP_002783936.1    Uniprot ID   A0A5T1ZSK1
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1253704..1264219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS06445 (WGQ50_06445) - 1253813..1255633 (-) 1821 Protein_1245 motility associated factor glycosyltransferase family protein -
  WGQ50_RS06450 (WGQ50_06450) - 1255630..1257453 (-) 1824 WP_339078945.1 motility associated factor glycosyltransferase family protein -
  WGQ50_RS06455 (WGQ50_06455) - 1257463..1258704 (-) 1242 WP_060785289.1 DUF2920 family protein -
  WGQ50_RS06460 (WGQ50_06460) ctsG 1258704..1259219 (-) 516 WP_002783936.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WGQ50_RS06465 (WGQ50_06465) tsaD 1259223..1260230 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WGQ50_RS06470 (WGQ50_06470) - 1260227..1261621 (-) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WGQ50_RS06475 (WGQ50_06475) dxr 1261618..1262694 (-) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WGQ50_RS06480 (WGQ50_06480) - 1262691..1263416 (-) 726 WP_052778193.1 phosphatidate cytidylyltransferase -
  WGQ50_RS06485 (WGQ50_06485) - 1263425..1263763 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18969.97 Da        Isoelectric Point: 8.4861

>NTDB_id=962052 WGQ50_RS06460 WP_002783936.1 1258704..1259219(-) (ctsG) [Campylobacter coli strain NPRC(S) 01.13898]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLSTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=962052 WGQ50_RS06460 WP_002783936.1 1258704..1259219(-) (ctsG) [Campylobacter coli strain NPRC(S) 01.13898]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAGCACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1ZSK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778