Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACI5E1_RS07505 Genome accession   NZ_CP173662
Coordinates   1637768..1638112 (+) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A0ABM6X3Z1
Organism   Actinobacillus pleuropneumoniae strain APL2305174E     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632768..1643112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5E1_RS07485 (ACI5E1_07475) - 1633358..1634332 (+) 975 WP_012478345.1 IS30-like element ISApl1 family transposase -
  ACI5E1_RS07490 (ACI5E1_07480) waaF 1634431..1635468 (-) 1038 WP_012263213.1 lipopolysaccharide heptosyltransferase II -
  ACI5E1_RS07495 (ACI5E1_07485) - 1635550..1635954 (-) 405 WP_005599908.1 MliC family protein -
  ACI5E1_RS07500 (ACI5E1_07490) - 1636076..1637467 (-) 1392 WP_237593322.1 LysM-like peptidoglycan-binding domain-containing protein -
  ACI5E1_RS07505 (ACI5E1_07495) comEA/comE1 1637768..1638112 (+) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  ACI5E1_RS07510 (ACI5E1_07500) asd 1638263..1639153 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  ACI5E1_RS07515 (ACI5E1_07505) hsdR 1639270..1641612 (+) 2343 WP_012263216.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=961641 ACI5E1_RS07505 WP_005599904.1 1637768..1638112(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain APL2305174E]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=961641 ACI5E1_RS07505 WP_005599904.1 1637768..1638112(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain APL2305174E]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43