Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   V8N34_RS08175 Genome accession   NZ_CP149804
Coordinates   1678261..1678950 (-) Length   229 a.a.
NCBI ID   WP_024381695.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673261..1683950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS08150 (V8N34_08150) - 1674033..1675184 (-) 1152 WP_024388494.1 replication initiation/membrane attachment protein -
  V8N34_RS08155 (V8N34_08155) nrdR 1675171..1675662 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  V8N34_RS08160 (V8N34_08160) - 1675734..1676864 (-) 1131 WP_024388493.1 AI-2E family transporter -
  V8N34_RS08165 (V8N34_08165) - 1677093..1677329 (-) 237 WP_153308736.1 hypothetical protein -
  V8N34_RS08170 (V8N34_08170) - 1677369..1677617 (-) 249 WP_318825491.1 hypothetical protein -
  V8N34_RS08175 (V8N34_08175) covR 1678261..1678950 (-) 690 WP_024381695.1 winged helix-turn-helix domain-containing protein Regulator
  V8N34_RS08180 (V8N34_08180) gndA 1679032..1680459 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  V8N34_RS08185 (V8N34_08185) - 1680556..1681095 (-) 540 WP_339059827.1 DUF177 domain-containing protein -
  V8N34_RS08190 (V8N34_08190) trxB 1681105..1682022 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  V8N34_RS08195 (V8N34_08195) - 1682036..1682260 (-) 225 WP_002936682.1 DUF4059 family protein -
  V8N34_RS08200 (V8N34_08200) - 1682278..1683621 (-) 1344 WP_014637130.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26239.14 Da        Isoelectric Point: 5.4013

>NTDB_id=961516 V8N34_RS08175 WP_024381695.1 1678261..1678950(-) (covR) [Streptococcus suis strain YA]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISELVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=961516 V8N34_RS08175 WP_024381695.1 1678261..1678950(-) (covR) [Streptococcus suis strain YA]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTAGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCGACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTTCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
CAGTGAGTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.052

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.373

100

0.437