Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   V8N34_RS05075 Genome accession   NZ_CP149804
Coordinates   1048487..1049713 (-) Length   408 a.a.
NCBI ID   WP_002934974.1    Uniprot ID   G7SE29
Organism   Streptococcus suis strain YA     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1043487..1054713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS05045 (V8N34_05045) - 1043766..1044146 (-) 381 WP_318825381.1 hypothetical protein -
  V8N34_RS05050 (V8N34_05050) - 1044281..1044463 (+) 183 WP_044670667.1 4-oxalocrotonate tautomerase -
  V8N34_RS05055 (V8N34_05055) lepA 1044513..1046345 (-) 1833 WP_002943192.1 translation elongation factor 4 -
  V8N34_RS05060 (V8N34_05060) - 1046633..1047304 (-) 672 WP_172078920.1 HIRAN domain-containing protein -
  V8N34_RS05065 (V8N34_05065) ndk 1047408..1047821 (-) 414 WP_024413158.1 nucleoside-diphosphate kinase -
  V8N34_RS05070 (V8N34_05070) yihA 1047844..1048431 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  V8N34_RS05075 (V8N34_05075) clpX 1048487..1049713 (-) 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V8N34_RS05080 (V8N34_05080) - 1049911..1050423 (-) 513 WP_044667265.1 dihydrofolate reductase -
  V8N34_RS05085 (V8N34_05085) - 1050709..1051548 (-) 840 WP_339059885.1 thymidylate synthase -
  V8N34_RS05090 (V8N34_05090) - 1051601..1051903 (-) 303 WP_044670658.1 hypothetical protein -
  V8N34_RS05095 (V8N34_05095) - 1051915..1052193 (-) 279 WP_024381822.1 hypothetical protein -
  V8N34_RS05100 (V8N34_05100) - 1052320..1053279 (-) 960 WP_318825380.1 ROK family glucokinase -
  V8N34_RS05105 (V8N34_05105) - 1053375..1053710 (-) 336 WP_318825379.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45318.84 Da        Isoelectric Point: 4.6382

>NTDB_id=961512 V8N34_RS05075 WP_002934974.1 1048487..1049713(-) (clpX) [Streptococcus suis strain YA]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=961512 V8N34_RS05075 WP_002934974.1 1048487..1049713(-) (clpX) [Streptococcus suis strain YA]
ATGGCAGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCCGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAGCAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGCA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTGGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAAACTGGTGCTCGTGGACTTCGCTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574