Detailed information NTG0961437

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WKW51_RS16565
• Genome accession: NZ_CP149800
• Coordinates: 3460717..3461577 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain AB7276
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3455717..3466577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKW51_RS16545 (WKW51_16545)	secG	3456322..3456651 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
WKW51_RS16550 (WKW51_16550)	tpiA	3456664..3457458 (-)	795	WP_000016936.1	triose-phosphate isomerase	-
WKW51_RS16555 (WKW51_16555)	pilB	3457749..3459461 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WKW51_RS16560 (WKW51_16560)	pilC	3459491..3460717 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
WKW51_RS16565 (WKW51_16565)	pilD	3460717..3461577 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
WKW51_RS16570 (WKW51_16570)	coaE	3461579..3462175 (+)	597	WP_000874123.1	dephospho-CoA kinase	-
WKW51_RS16575 (WKW51_16575)	-	3462172..3463086 (-)	915	WP_104039450.1	DMT family transporter	-
WKW51_RS16580 (WKW51_16580)	rlmB	3463122..3463871 (-)	750	WP_001118147.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
WKW51_RS16585 (WKW51_16585)	-	3463973..3464299 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
WKW51_RS16590 (WKW51_16590)	-	3464376..3465686 (-)	1311	WP_000753282.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=961437 WKW51_RS16565 WP_001152273.1 3460717..3461577(+) (pilD) [Acinetobacter baumannii strain AB7276]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=961437 WKW51_RS16565 WP_001152273.1 3460717..3461577(+) (pilD) [Acinetobacter baumannii strain AB7276]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCGAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441