Detailed information NTG0096143

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AABA16_RS10610
• Genome accession: NZ_AP028610
• Coordinates: 2049834..2050931 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266666.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2044834..2055931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA16_RS10585 (TKY124516_20460)	pgsA	2045355..2045900 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AABA16_RS10590 (TKY124516_20470)	rodZ	2045911..2046732 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
AABA16_RS10595 (TKY124516_20480)	-	2046774..2048057 (-)	1284	WP_000170217.1	pitrilysin family protein	-
AABA16_RS10600 (TKY124516_20490)	-	2048054..2049304 (-)	1251	WP_000424271.1	pitrilysin family protein	-
AABA16_RS10605 (TKY124516_20500)	yaaA	2049463..2049831 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
AABA16_RS10610 (TKY124516_20510)	recF	2049834..2050931 (+)	1098	WP_000266666.1	DNA replication/repair protein RecF	Machinery gene
AABA16_RS10615 (TKY124516_20520)	guaB	2050982..2052460 (-)	1479	WP_000073424.1	IMP dehydrogenase	-
AABA16_RS10620 (TKY124516_20530)	trpS	2052612..2053637 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
AABA16_RS10625 (TKY124516_20540)	-	2053843..2055465 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41915.99 Da
• Isoelectric Point: 8.6711

>NTDB_id=96143 AABA16_RS10610 WP_000266666.1 2049834..2050931(+) (recF) [Streptococcus pneumoniae strain Sep5]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSKSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=96143 AABA16_RS10610 WP_000266666.1 2049834..2050931(+) (recF) [Streptococcus pneumoniae strain Sep5]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATCGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAAATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAA
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTACC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	45.628	100	0.458