Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI3NC_RS20195 Genome accession   NZ_CP173570
Coordinates   3908542..3909018 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 98198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3903542..3914018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3NC_RS20160 (ACI3NC_20140) kpsS 3905142..3906362 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  ACI3NC_RS20165 (ACI3NC_20145) - 3906388..3906618 (-) 231 Protein_3703 hypothetical protein -
  ACI3NC_RS20170 (ACI3NC_20150) - 3906724..3906900 (-) 177 WP_057950854.1 DUF957 domain-containing protein -
  ACI3NC_RS20175 (ACI3NC_20155) - 3906917..3907347 (-) 431 Protein_3705 DUF5983 family protein -
  ACI3NC_RS20180 (ACI3NC_20160) cbtA 3907344..3907721 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI3NC_RS20185 (ACI3NC_20165) cbeA 3907810..3908178 (-) 369 Protein_3707 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI3NC_RS20190 (ACI3NC_20170) - 3908252..3908473 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ACI3NC_RS20195 (ACI3NC_20175) radC 3908542..3909018 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  ACI3NC_RS20200 (ACI3NC_20180) - 3909034..3909519 (-) 486 WP_000849556.1 antirestriction protein -
  ACI3NC_RS20205 (ACI3NC_20185) - 3909574..3910392 (-) 819 WP_057950853.1 DUF932 domain-containing protein -
  ACI3NC_RS20210 (ACI3NC_20190) - 3910510..3910705 (-) 196 Protein_3712 DUF905 family protein -
  ACI3NC_RS20215 (ACI3NC_20195) - 3910776..3913622 (-) 2847 WP_086352853.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=960984 ACI3NC_RS20195 WP_001186726.1 3908542..3909018(-) (radC) [Escherichia coli strain 98198]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=960984 ACI3NC_RS20195 WP_001186726.1 3908542..3909018(-) (radC) [Escherichia coli strain 98198]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392