Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACI3NC_RS20160 Genome accession   NZ_CP173570
Coordinates   3905142..3906362 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain 98198     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3900142..3911362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3NC_RS20145 (ACI3NC_20125) rfbA 3900287..3901165 (+) 879 WP_029391971.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACI3NC_RS20150 (ACI3NC_20130) rfbC 3901232..3901783 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  ACI3NC_RS20155 (ACI3NC_20135) - 3901833..3903980 (+) 2148 WP_029391970.1 capsular polysaccharide biosynthesis protein -
  ACI3NC_RS20160 (ACI3NC_20140) kpsS 3905142..3906362 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  ACI3NC_RS20165 (ACI3NC_20145) - 3906388..3906618 (-) 231 Protein_3703 hypothetical protein -
  ACI3NC_RS20170 (ACI3NC_20150) - 3906724..3906900 (-) 177 WP_057950854.1 DUF957 domain-containing protein -
  ACI3NC_RS20175 (ACI3NC_20155) - 3906917..3907347 (-) 431 Protein_3705 DUF5983 family protein -
  ACI3NC_RS20180 (ACI3NC_20160) cbtA 3907344..3907721 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI3NC_RS20185 (ACI3NC_20165) cbeA 3907810..3908178 (-) 369 Protein_3707 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI3NC_RS20190 (ACI3NC_20170) - 3908252..3908473 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ACI3NC_RS20195 (ACI3NC_20175) radC 3908542..3909018 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  ACI3NC_RS20200 (ACI3NC_20180) - 3909034..3909519 (-) 486 WP_000849556.1 antirestriction protein -
  ACI3NC_RS20205 (ACI3NC_20185) - 3909574..3910392 (-) 819 WP_057950853.1 DUF932 domain-containing protein -
  ACI3NC_RS20210 (ACI3NC_20190) - 3910510..3910705 (-) 196 Protein_3712 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=960983 ACI3NC_RS20160 WP_000794251.1 3905142..3906362(+) (kpsS) [Escherichia coli strain 98198]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=960983 ACI3NC_RS20160 WP_000794251.1 3905142..3906362(+) (kpsS) [Escherichia coli strain 98198]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382