Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI3MJ_RS14905 Genome accession   NZ_CP173567
Coordinates   2735542..2736018 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain 98200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2730542..2741018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MJ_RS14870 (ACI3MJ_14855) kpsS 2732142..2733362 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  ACI3MJ_RS14875 (ACI3MJ_14860) - 2733388..2733618 (-) 231 Protein_2523 hypothetical protein -
  ACI3MJ_RS14880 (ACI3MJ_14865) - 2733724..2733900 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  ACI3MJ_RS14885 (ACI3MJ_14870) - 2733917..2734347 (-) 431 Protein_2525 DUF5983 family protein -
  ACI3MJ_RS14890 (ACI3MJ_14875) cbtA 2734344..2734721 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI3MJ_RS14895 (ACI3MJ_14880) cbeA 2734810..2735178 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI3MJ_RS14900 (ACI3MJ_14885) - 2735252..2735473 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ACI3MJ_RS14905 (ACI3MJ_14890) radC 2735542..2736018 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  ACI3MJ_RS14910 (ACI3MJ_14895) - 2736034..2736519 (-) 486 WP_000214310.1 antirestriction protein -
  ACI3MJ_RS14915 (ACI3MJ_14900) - 2736611..2737429 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  ACI3MJ_RS14920 (ACI3MJ_14905) - 2737547..2737744 (-) 198 Protein_2532 DUF905 family protein -
  ACI3MJ_RS14925 (ACI3MJ_14910) - 2737819..2738274 (-) 456 WP_000581502.1 IrmA family protein -
  ACI3MJ_RS14930 (ACI3MJ_14915) - 2738350..2740865 (-) 2516 Protein_2534 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=960890 ACI3MJ_RS14905 WP_001186725.1 2735542..2736018(-) (radC) [Escherichia coli strain 98200]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=960890 ACI3MJ_RS14905 WP_001186725.1 2735542..2736018(-) (radC) [Escherichia coli strain 98200]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399