Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACI3MJ_RS14870 Genome accession   NZ_CP173567
Coordinates   2732142..2733362 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain 98200     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2727142..2738362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MJ_RS14855 (ACI3MJ_14840) rfbA 2727287..2728165 (+) 879 WP_000166786.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACI3MJ_RS14860 (ACI3MJ_14845) rfbC 2728231..2728782 (+) 552 WP_001100778.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  ACI3MJ_RS14865 (ACI3MJ_14850) - 2728832..2730979 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  ACI3MJ_RS14870 (ACI3MJ_14855) kpsS 2732142..2733362 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  ACI3MJ_RS14875 (ACI3MJ_14860) - 2733388..2733618 (-) 231 Protein_2523 hypothetical protein -
  ACI3MJ_RS14880 (ACI3MJ_14865) - 2733724..2733900 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  ACI3MJ_RS14885 (ACI3MJ_14870) - 2733917..2734347 (-) 431 Protein_2525 DUF5983 family protein -
  ACI3MJ_RS14890 (ACI3MJ_14875) cbtA 2734344..2734721 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI3MJ_RS14895 (ACI3MJ_14880) cbeA 2734810..2735178 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI3MJ_RS14900 (ACI3MJ_14885) - 2735252..2735473 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ACI3MJ_RS14905 (ACI3MJ_14890) radC 2735542..2736018 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  ACI3MJ_RS14910 (ACI3MJ_14895) - 2736034..2736519 (-) 486 WP_000214310.1 antirestriction protein -
  ACI3MJ_RS14915 (ACI3MJ_14900) - 2736611..2737429 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  ACI3MJ_RS14920 (ACI3MJ_14905) - 2737547..2737744 (-) 198 Protein_2532 DUF905 family protein -
  ACI3MJ_RS14925 (ACI3MJ_14910) - 2737819..2738274 (-) 456 WP_000581502.1 IrmA family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=960889 ACI3MJ_RS14870 WP_000794251.1 2732142..2733362(+) (kpsS) [Escherichia coli strain 98200]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=960889 ACI3MJ_RS14870 WP_000794251.1 2732142..2733362(+) (kpsS) [Escherichia coli strain 98200]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGAGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382