Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACI3M3_RS04305 Genome accession   NZ_CP173561
Coordinates   895722..896459 (+) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain 98201     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 890722..901459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M3_RS04290 (ACI3M3_04290) clpC 891176..893749 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ACI3M3_RS04295 (ACI3M3_04295) yfiH 893879..894610 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  ACI3M3_RS04300 (ACI3M3_04300) rluD 894607..895587 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACI3M3_RS04305 (ACI3M3_04305) comL 895722..896459 (+) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  ACI3M3_RS04310 (ACI3M3_04310) raiA 896730..897071 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ACI3M3_RS04315 (ACI3M3_04315) pheL 897175..897222 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ACI3M3_RS04320 (ACI3M3_04320) pheA 897321..898481 (+) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  ACI3M3_RS04325 (ACI3M3_04325) tyrA 898524..899645 (-) 1122 WP_000225217.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ACI3M3_RS04330 (ACI3M3_04330) aroF 899656..900726 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ACI3M3_RS04335 (ACI3M3_04335) yfiL 900936..901329 (+) 394 Protein_845 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=960771 ACI3M3_RS04305 WP_000197673.1 895722..896459(+) (comL) [Escherichia coli strain 98201]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=960771 ACI3M3_RS04305 WP_000197673.1 895722..896459(+) (comL) [Escherichia coli strain 98201]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371