Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI3M8_RS25690 Genome accession   NZ_CP173546
Coordinates   5204627..5205103 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 98205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5199627..5210103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M8_RS25655 (ACI3M8_25635) kpsS 5201227..5202447 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  ACI3M8_RS25660 (ACI3M8_25640) - 5202473..5202703 (-) 231 Protein_4899 hypothetical protein -
  ACI3M8_RS25665 (ACI3M8_25645) - 5202809..5202985 (-) 177 WP_057950854.1 DUF957 domain-containing protein -
  ACI3M8_RS25670 (ACI3M8_25650) - 5203002..5203432 (-) 431 Protein_4901 DUF5983 family protein -
  ACI3M8_RS25675 (ACI3M8_25655) cbtA 5203429..5203806 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI3M8_RS25680 (ACI3M8_25660) cbeA 5203895..5204263 (-) 369 Protein_4903 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI3M8_RS25685 (ACI3M8_25665) - 5204337..5204558 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ACI3M8_RS25690 (ACI3M8_25670) radC 5204627..5205103 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  ACI3M8_RS25695 (ACI3M8_25675) - 5205119..5205604 (-) 486 WP_000849556.1 antirestriction protein -
  ACI3M8_RS25700 (ACI3M8_25680) - 5205659..5206477 (-) 819 WP_057950853.1 DUF932 domain-containing protein -
  ACI3M8_RS25705 (ACI3M8_25685) - 5206595..5206790 (-) 196 Protein_4908 DUF905 family protein -
  ACI3M8_RS25710 (ACI3M8_25690) - 5206861..5209707 (-) 2847 WP_086352853.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=960587 ACI3M8_RS25690 WP_001186726.1 5204627..5205103(-) (radC) [Escherichia coli strain 98205]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=960587 ACI3M8_RS25690 WP_001186726.1 5204627..5205103(-) (radC) [Escherichia coli strain 98205]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392