Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACI3M8_RS25655 Genome accession   NZ_CP173546
Coordinates   5201227..5202447 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain 98205     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 5196227..5207447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3M8_RS25640 (ACI3M8_25620) rfbA 5196372..5197250 (+) 879 WP_029391971.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACI3M8_RS25645 (ACI3M8_25625) rfbC 5197317..5197868 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  ACI3M8_RS25650 (ACI3M8_25630) - 5197918..5200065 (+) 2148 WP_029391970.1 capsular polysaccharide biosynthesis protein -
  ACI3M8_RS25655 (ACI3M8_25635) kpsS 5201227..5202447 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  ACI3M8_RS25660 (ACI3M8_25640) - 5202473..5202703 (-) 231 Protein_4899 hypothetical protein -
  ACI3M8_RS25665 (ACI3M8_25645) - 5202809..5202985 (-) 177 WP_057950854.1 DUF957 domain-containing protein -
  ACI3M8_RS25670 (ACI3M8_25650) - 5203002..5203432 (-) 431 Protein_4901 DUF5983 family protein -
  ACI3M8_RS25675 (ACI3M8_25655) cbtA 5203429..5203806 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI3M8_RS25680 (ACI3M8_25660) cbeA 5203895..5204263 (-) 369 Protein_4903 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI3M8_RS25685 (ACI3M8_25665) - 5204337..5204558 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ACI3M8_RS25690 (ACI3M8_25670) radC 5204627..5205103 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  ACI3M8_RS25695 (ACI3M8_25675) - 5205119..5205604 (-) 486 WP_000849556.1 antirestriction protein -
  ACI3M8_RS25700 (ACI3M8_25680) - 5205659..5206477 (-) 819 WP_057950853.1 DUF932 domain-containing protein -
  ACI3M8_RS25705 (ACI3M8_25685) - 5206595..5206790 (-) 196 Protein_4908 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=960586 ACI3M8_RS25655 WP_000794251.1 5201227..5202447(+) (kpsS) [Escherichia coli strain 98205]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=960586 ACI3M8_RS25655 WP_000794251.1 5201227..5202447(+) (kpsS) [Escherichia coli strain 98205]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382