Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WKI56_RS15535 Genome accession   NZ_CP149650
Coordinates   3063275..3063919 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain MJ02     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3058275..3068919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI56_RS15500 (WKI56_15500) - 3059461..3059892 (+) 432 WP_087634939.1 Na(+)/H(+) antiporter subunit B -
  WKI56_RS15505 (WKI56_15505) - 3059892..3060233 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  WKI56_RS15510 (WKI56_15510) - 3060226..3061707 (+) 1482 WP_017419418.1 Na+/H+ antiporter subunit D -
  WKI56_RS15515 (WKI56_15515) - 3061713..3062188 (+) 476 Protein_2997 Na+/H+ antiporter subunit E -
  WKI56_RS15520 (WKI56_15520) - 3062188..3062472 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  WKI56_RS15525 (WKI56_15525) mnhG 3062456..3062830 (+) 375 WP_017419421.1 monovalent cation/H(+) antiporter subunit G -
  WKI56_RS15530 (WKI56_15530) - 3062870..3063253 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  WKI56_RS15535 (WKI56_15535) comA 3063275..3063919 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  WKI56_RS15540 (WKI56_15540) comP 3064000..3066303 (-) 2304 WP_339078386.1 histidine kinase Regulator
  WKI56_RS15545 (WKI56_15545) comX 3066323..3066502 (-) 180 WP_318010531.1 competence pheromone ComX -
  WKI56_RS15550 (WKI56_15550) comQ 3066456..3067442 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  WKI56_RS15555 (WKI56_15555) degQ 3067573..3067713 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  WKI56_RS15560 (WKI56_15560) - 3068178..3068519 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=960373 WKI56_RS15535 WP_014418762.1 3063275..3063919(-) (comA) [Bacillus velezensis strain MJ02]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=960373 WKI56_RS15535 WP_014418762.1 3063275..3063919(-) (comA) [Bacillus velezensis strain MJ02]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86